Hg_chrom2_TN10mRNA_3225
Organism: Heterodera glycines Gene Locus: chr2:5914286-5918735 Feature type: polypeptideProtein Sequence
Length: 621
(Signal peptide: 1-27)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.049 | 1.198 | 0.586 | 1.111 | 0.751 | 1.363 | 0.537 | 2.415 | 0.859 | 1.001 | 0.659 | 1.8 | 1.521 | 1.548 | 1.577 | 0.851 | 0.818 | 0.83 | 1.486 | 0.568 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3085
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-pJ2_J3_J4
|
0.992
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
nucleus
|
KRLMWRDHFVLMMPKRHKN,RRSQIWQKFNWPIRKKRKT
|
— | — | — | — |
1-27
|
0.959
|
0.998
|
0.000
|
0.000
|
0.133
|
0.060
|
0.031
|
0.293
|
0.264
|
0.299
|
0.226
|
0.029
|
0.718
|
0.181
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006782
|
1.000
|
1.000
|
Hsc_gene_24460.t1
|
Hsc_gene_24459.t1;Hsc_gene_24460.t1
|
— |
Q6X1T6.1 Zinc metalloproteinase-disintegrin-like EoMP06 [Echis ocellatus]
|
KAF7639472.1 Peptidase M12B domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004222|GO:0006508|GO:0008237
|
GO:0008150_0.778|GO:0005575_0.774|GO:0110165_0.766|GO:0003674_0.636|GO:0016020_0.636|GO:0009987_0.599|GO:0071944_0.543|GO:0005886_0.514|GO:0065007_0.513|GO:0050789_0.502
|
IPR001590+92-323_99-252+|IPR024079+93-322+
|
— |
PF01421+99-252+Reprolysin_(M12B)_family_zinc_metalloprotease
|
— |
PTHR11905+36-400+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
522-621
|
1.000
|
1-521
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.826
|
70720.220
|
9.830
|
42.000
|
24.638
|
14.171
|
46.055
|
53.945
|
16.908
|
7.729
|
49.597
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
313.624
|
340.208
|
192.844
|
504.651
|
415.374
|
537.432
|
244.406
|
282.805
|
76.878
|
370.301
|
244.548
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.049
|
0.432
|
1.497
|
-0.312
|
0.386
|
-1.129
|
-1.034
|
— | — |
2.893
|
— | — | — |