SCN Proteipedia

Hg_chrom2_TN10mRNA_3233

Organism: Heterodera glycines Gene Locus: chr2:5943934-5945195 Feature type: polypeptide

Protein Sequence

Length: 154

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.604	1.057	0.826	0.224	0.974	2.498	0.464	1.299	1.443	1.229	0.984	1.91	0.902	1.124	1.59	1.206	1.171	0.197	1.998	0.382	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom2_TN10gene_3093	—	—	1.222	1.000	1.000	1.000	1.000	1.000	2.000	1.000	1.000	2.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	7-ppJ2	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	RPRR	—	—	—	—	—	—	0.091	—	—	0.755	0.161	0.012	0.279	0.049	0.064	0.103	0.026	0.080	0.042

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0003295	2.000	1.000	Hsc_gene_24469.t1	Hsc_gene_24469.t1	—	P17487.2 Homeobox protein ceh-12 [Caenorhabditis elegans]	KAI6230965.1 Homeobox domain-containing protein [Aphelenchoides besseyi]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0000981\|GO:0003677\|GO:0006355\|GO:0021520	GO:0008150_0.916\|GO:0009987_0.790\|GO:0032501_0.763\|GO:0065007_0.754\|GO:0050789_0.750\|GO:0050794_0.742\|GO:0005575_0.739\|GO:0032502_0.739\|GO:0048856_0.734\|GO:0110165_0.730\|GO:0005622_0.705\|GO:0043226_0.700\|GO:0007275_0.696\|GO:0043229_0.693\|GO:0008152_0.667\|GO:0009058_0.667\|GO:0009059_0.667\|GO:0043170_0.667\|GO:0044237_0.667\|GO:0044249_0.667\|GO:0019222_0.665\|GO:0031323_0.665\|GO:0010467_0.664\|GO:0060255_0.660\|GO:0009889_0.646\|GO:0010556_0.646\|GO:0031326_0.646\|GO:0016020_0.645\|GO:0010468_0.633\|GO:0044238_0.618\|GO:0080090_0.618\|GO:0006139_0.612\|GO:0034654_0.612\|GO:0090304_0.612\|GO:0141187_0.612\|GO:0016070_0.609\|GO:0032774_0.609\|GO:0006351_0.596\|GO:0019219_0.595\|GO:0051252_0.595\|GO:2001141_0.595\|GO:0043227_0.594\|GO:0003674_0.587\|GO:0005488_0.587\|GO:0043231_0.584\|GO:0006355_0.582\|GO:0005634_0.567\|GO:0048731_0.551\|GO:0097159_0.544\|GO:0003676_0.539\|GO:0048513_0.527\|GO:0003677_0.515\|GO:0043565_0.509	IPR001356+84-144_86-148_87-143_87-144+\|IPR009057+69-144+\|IPR017970+119-142+\|IPR020479+108-119_123-133_133-142+\|IPR042768+54-148+	SM00389+86-148+	PF00046+87-143+Homeodomain	G3DSA:1.10.10.60:FF:000417+69-146+Even-skipped_homeobox_1	PTHR24335+54-148+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	135-154	1.000	1-134	1b72_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.824	17920.360	10.356	8.000	27.273	9.740	57.143	42.857	16.883	10.390	41.558

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	brown	brown	41.903	75.156	173.806	72.687	17.681	8.753	4.868	107.150	8.400	4.486	6.164

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.980	—	-1.149	-2.075	-0.997	—	3.516	-4.318	—	—	—	—	—

No JSON data available for plots.

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