Hg_chrom2_TN10mRNA_3235
Organism: Heterodera glycines Gene Locus: chr2:5947466-5950236 Feature type: polypeptideProtein Sequence
Length: 514
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.633 | 1.267 | 0.814 | 0.738 | 0.973 | 0.848 | 0.417 | 1.848 | 1.383 | 1.525 | 0.884 | 1.602 | 1.729 | 0.898 | 1.31 | 1.112 | 0.702 | 0.973 | 1.197 | 0.801 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3095
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular|golgi_apparatus
|
— | — |
76-113
|
0.990
|
— | — | — | — |
0.005
|
— | — |
0.101
|
0.053
|
0.009
|
0.189
|
0.365
|
0.262
|
0.876
|
0.101
|
0.095
|
0.641
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006787
|
1.000
|
1.000
|
Hsc_gene_24471.t1
|
Hsc_gene_24471.t1
|
— |
Q18416.1 Glycosyltransferase family 92 protein C33H5.2 [Caenorhabditis elegans]
|
KAI1709434.1 glycosyltransferase family 92 domain-containing protein [Ditylenchus destructor]
|
No
|
-0.130
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR008166+163-388+|IPR052012+8-511+
|
— |
PF01697+163-388+Glycosyltransferase_family_92
|
— |
PTHR21645+8-511+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-514
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.783
|
59482.890
|
8.904
|
19.500
|
26.265
|
14.202
|
47.082
|
52.918
|
15.953
|
10.311
|
44.163
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
blue
|
202.022
|
58.178
|
14.241
|
13.013
|
119.480
|
193.055
|
51.727
|
8.781
|
10.828
|
703.796
|
406.810
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.255
|
-2.298
|
— |
3.165
|
0.709
|
-1.890
|
-4.575
|
2.705
|
-6.129
|
— | — | — | — |
No JSON data available for plots.