Hg_chrom2_TN10mRNA_3247
Organism: Heterodera glycines Gene Locus: chr2:6004598-6007185 Feature type: polypeptideProtein Sequence
Length: 282
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.536 | 0.66 | 0.838 | 0.856 | 1.596 | 0.636 | 0.591 | 1.241 | 1.34 | 1.39 | 0.537 | 1.877 | 1.872 | 0.818 | 1.954 | 0.811 | 0.93 | 0.967 | 2.455 | 0.417 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3107
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
0.984
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — |
23-56
|
0.991
|
— | — |
0.000
|
— | — |
0.282
|
0.603
|
0.064
|
0.506
|
0.508
|
0.215
|
0.272
|
0.065
|
0.281
|
0.038
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006793
|
1.000
|
1.000
|
Hsc_gene_24476.t1
|
Hsc_gene_24476.t1
|
— |
Q86SQ9.3 Dehydrodolichyl diphosphate synthase complex subunit DHDDS [Homo sapiens]
|
KAI1705527.1 putative undecaprenyl diphosphate synthase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016765
|
GO:0005575_0.786|GO:0110165_0.783|GO:0003674_0.773|GO:0005622_0.685|GO:0003824_0.663|GO:0016020_0.643|GO:0016740_0.622|GO:0005737_0.615|GO:0008150_0.605|GO:0016765_0.581|GO:0043226_0.552|GO:0043229_0.533|GO:0009987_0.524|GO:0004659_0.511
|
IPR001441+14-274_32-275_32-276_35-268_39-275+|IPR018520+218-234+|IPR036424+7-269_28-269+
|
— |
PF01255+39-275+Putative_undecaprenyl_diphosphate_synthase
|
— |
PTHR10291+14-274+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-282
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.541
|
33185.310
|
6.602
|
0.500
|
29.787
|
13.830
|
46.454
|
53.546
|
15.603
|
14.184
|
41.489
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
greenyellow
|
1016.807
|
810.515
|
948.651
|
918.526
|
1108.892
|
889.801
|
1260.937
|
713.297
|
669.058
|
1452.755
|
1116.885
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — |
0.240
|
-0.303
|
0.514
|
-0.421
|
0.964
|
— | — | — | — | — |
No JSON data available for plots.