Hg_chrom2_TN10mRNA_3249
Organism: Heterodera glycines Gene Locus: chr2:6008727-6019606 Feature type: polypeptideProtein Sequence
Length: 2,173
(Signal peptide: 1-21)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.589 | 1.423 | 0.703 | 0.428 | 2.01 | 1.121 | 0.493 | 0.966 | 1.626 | 1.499 | 1.694 | 1.76 | 1.572 | 0.434 | 0.958 | 0.69 | 0.619 | 0.572 | 1.204 | 0.609 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3109
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
17-ppJ2_pJ2
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
cytoplasm
|
nucleus
|
RKKR,KKEETVEKEEHFRKERLK,KKAAKIEKEWAQLKQRKL,KRQLEITKEKAQERRKIV,KKIDQIIEIIDNENAEKKR,KKRKSKTKKRKNVKKKNEK
|
— | — | — | — |
1-21
|
0.886
|
0.976
|
0.000
|
0.000
|
0.388
|
0.165
|
0.015
|
0.650
|
0.127
|
0.145
|
0.129
|
0.072
|
0.165
|
0.295
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006794
|
1.000
|
1.000
|
Hsc_gene_24477.t1
|
— | — | — |
KAI3420075.1 polynucleotide adenylyltransferase [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:1990817
|
GO:0005575_0.753|GO:0110165_0.747|GO:0005622_0.732|GO:0016020_0.678|GO:0043226_0.677|GO:0043229_0.658|GO:0008150_0.612|GO:0043227_0.599|GO:0043231_0.550|GO:0003674_0.535|GO:0009987_0.517
|
IPR007012+1868-2008+
|
— |
PF04928+1868-2008+Poly(A)_polymerase_central_domain
|
— |
PTHR10682+1865-2112+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1151-1315
|
2.000
|
1-1150;1316-2173
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.512
|
255326.970
|
7.483
|
20.000
|
33.732
|
11.229
|
52.830
|
47.170
|
17.809
|
15.923
|
35.067
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
green
|
3304.508
|
68.351
|
823.913
|
898.194
|
312.170
|
104.799
|
34.879
|
118.691
|
9510.208
|
6439.195
|
7755.343
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.362
|
3.580
|
0.234
|
-1.555
|
-1.559
|
-1.580
|
— |
-1.625
|
— |
-3.233
|
-4.087
|
— | — |