Hg_chrom2_TN10mRNA_3251
Organism: Heterodera glycines Gene Locus: chr2:6024355-6026843 Feature type: polypeptideProtein Sequence
Length: 337
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.863 | 0.621 | 1.187 | 0.205 | 2.028 | 1.293 | 0.636 | 0.742 | 0.659 | 1.123 | 1.619 | 1.746 | 0.907 | 0.685 | 1.151 | 1.06 | 0.973 | 0.854 | 0.913 | 0.349 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3111
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal|nuclear_export_signal
|
cytoplasm
|
— |
AKKEAEQKRMRKETEERKLAERRAAQK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.404
|
0.268
|
0.068
|
0.672
|
0.342
|
0.227
|
0.446
|
0.018
|
0.162
|
0.097
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006795
|
1.000
|
1.000
|
Hsc_gene_24479.t1
|
Hsc_gene_24479.t1
|
— |
Q5ZIN1.1 Nuclear migration protein nudC [Gallus gallus]
|
KAI1728766.1 CS domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.938|GO:0110165_0.937|GO:0008150_0.934|GO:0005622_0.918|GO:0009987_0.904|GO:0051179_0.645|GO:0051640_0.584|GO:0005737_0.578|GO:0071840_0.545|GO:0016043_0.532
|
IPR007052+172-264_175-253+|IPR008978+158-279_168-298+|IPR025934+12-49+|IPR037898+20-336+
|
— |
PF04969+175-253+CS_domain|PF14050+12-49+N-terminal_conserved_domain_of_Nudc.
|
G3DSA:2.60.40.790:FF:000001+168-298+Nuclear_migration_protein_nudC
|
PTHR12356+20-336+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-7;54-181;264-337
|
2.000
|
8-53;182-263
|
1wfi_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.590
|
38203.030
|
5.299
|
-5.500
|
36.499
|
7.122
|
57.567
|
42.433
|
17.804
|
18.694
|
45.104
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
yellow
|
1740.247
|
1468.649
|
1245.071
|
1955.400
|
2244.053
|
1718.515
|
2330.973
|
1146.291
|
2350.991
|
1309.481
|
1755.842
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.468
|
0.276
|
0.760
|
0.166
|
-0.370
|
0.451
|
-0.688
|
1.166
|
— | — | — | — | — |
No JSON data available for plots.