Hg_chrom2_TN10mRNA_3253
Organism: Heterodera glycines Gene Locus: chr2:6035952-6039627 Feature type: polypeptideProtein Sequence
Length: 455
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.843 | 1.227 | 1.279 | 0.909 | 0.879 | 1.127 | 0.602 | 1.538 | 0.733 | 1.307 | 0.5 | 1.551 | 0.916 | 0.761 | 1.211 | 1.413 | 0.937 | 1.332 | 2.198 | 0.194 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3113
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
8-Eggs_J4_Males
|
0.993
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.847
|
0.115
|
0.005
|
0.313
|
0.032
|
0.041
|
0.051
|
0.003
|
0.021
|
0.044
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003298
|
2.000
|
1.000
|
Hsc_gene_24483.t1
|
Hsc_gene_24483.t1
|
— |
A8QB65.1 Ribosome biogenesis protein WDR12 homolog [Brugia malayi]
|
KAI3411753.1 putative 3',5'-cyclic phosphodiesterase pde-4, partial [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.781|GO:0110165_0.772|GO:0008150_0.721|GO:0005622_0.635|GO:0016020_0.615|GO:0009987_0.543|GO:0043226_0.525
|
IPR001680+99-136_207-246_209-246_214-249_278-318_281-318_285-327_321-359_324-359_327-368_365-405_370-405_372-414_409-447_414-446+|IPR012972+11-76+|IPR015943+87-265_266-454+|IPR019775+233-247_305-319_346-360+|IPR020472+233-247_346-360_392-406+|IPR036322+105-250_209-446+
|
SM00320+99-136_207-246_278-318_321-359_365-405_409-447+
|
PF00400+209-246_281-318_324-359_370-405_414-446+WD_domain,_G-beta_repeat|PF08154+11-76+NLE_(NUC135)_domain
|
— |
PTHR19855+31-412+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
242-286
|
2.000
|
1-241;287-455
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.553
|
50685.160
|
5.565
|
-7.000
|
24.615
|
9.890
|
49.890
|
50.110
|
12.308
|
12.308
|
55.604
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
2066.159
|
3033.715
|
1193.889
|
1424.728
|
1591.361
|
2424.879
|
1518.119
|
2147.618
|
1124.084
|
3196.016
|
2308.045
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.576
|
-1.228
|
0.364
|
0.128
|
0.623
|
-0.665
|
— |
-0.356
|
— | — | — | — | — |
No JSON data available for plots.