Hg_chrom2_TN10mRNA_3254
Organism: Heterodera glycines Gene Locus: chr2:6039886-6041121 Feature type: polypeptideProtein Sequence
Length: 226
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.183 | 0.515 | 0.885 | 1.526 | 1.032 | 1.361 | 0.79 | 1.327 | 0.688 | 1.734 | 0.335 | 1.301 | 1.352 | 0.596 | 1.535 | 0.948 | 0.798 | 1.006 | 1.361 | 0.521 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3114
|
— | — |
1.778
|
2.000
|
2.000
|
1.000
|
2.000
|
2.000
|
2.000
|
2.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_described
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— | — | — | — |
18-48
|
0.927
|
— | — |
0.006
|
— | — |
0.342
|
0.367
|
0.093
|
0.270
|
0.864
|
0.376
|
0.623
|
0.117
|
0.083
|
0.125
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001836
|
1.000
|
3.000
|
Hsc_gene_21022.t1;Hsc_gene_24484.t1;Hsc_gene_24486.t1
|
Hsc_gene_24484.t1
|
— | — |
KZV52704.1 ring finger protein [Dorcoceras hygrometricum]
|
No
|
0.050
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.858|GO:0005575_0.670|GO:0110165_0.669|GO:0003674_0.630|GO:0009987_0.606|GO:0008152_0.533|GO:0043170_0.517|GO:0016020_0.516|GO:0065007_0.507
|
IPR001841+5-46_6-45_6-46+|IPR013083+2-59+|IPR047126+5-115+
|
SM00184+6-45+
|
PF13639+5-46+Ring_finger_domain
|
— |
PTHR12109+5-115+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-226
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.526
|
25171.910
|
6.474
|
0.000
|
23.451
|
11.062
|
42.478
|
57.522
|
12.389
|
11.062
|
49.558
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
yellow
|
1405.249
|
1288.719
|
1514.299
|
1322.741
|
1263.487
|
1368.009
|
1142.313
|
2011.420
|
1092.433
|
1612.018
|
1389.339
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.099
|
— | — | — |
-0.249
|
0.448
|
-0.672
|
— | — | — | — | — |
No JSON data available for plots.