SCN Proteipedia

Hg_chrom2_TN10mRNA_3255

Organism: Heterodera glycines Gene Locus: chr2:6041887-6046486 Feature type: polypeptide

Protein Sequence

Length: 818

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.952	0.768	0.911	0.084	1.263	2.194	0.655	1.222	1.222	0.859	0.796	2.014	0.883	2.163	1.272	0.716	0.822	0.852	0.47	0.503	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom2_TN10gene_3115	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	14-Not_described	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	GGRKK,PPNKRPR	—	—	—	—	—	—	0.000	—	—	0.839	0.044	0.007	0.330	0.235	0.063	0.035	0.003	0.108	0.127

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0006796	1.000	1.000	Hsc_gene_24488.t1	Hsc_gene_24488.t1	—	A2VDN6.1 Splicing factor 3A subunit 1 [Bos taurus]	KAI1701779.1 pre-mRNA splicing factor PRP21 like protein domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003723\|GO:0005515\|GO:0006396\|GO:0045292	GO:0005575_0.927\|GO:0110165_0.924\|GO:0005622_0.876\|GO:0043226_0.808\|GO:0043229_0.787\|GO:0016020_0.781\|GO:0003674_0.692\|GO:0043227_0.679\|GO:0043231_0.658\|GO:0008150_0.629\|GO:0009987_0.553\|GO:0005488_0.548\|GO:0005634_0.546\|GO:0005737_0.507	IPR000061+71-122_71-124_73-115_173-224_173-226_175-217+\|IPR000626+733-815_740-811_746-812+\|IPR019954+766-791+\|IPR019956+750-770_771-791_792-813+\|IPR022030+243-486+\|IPR029071+744-816+\|IPR035563+733-811+\|IPR035967+43-122_58-128_148-225_168-226+\|IPR045146+45-810+	SM00213+740-811+\|SM00648+71-124_173-226+	PF00240+746-812+Ubiquitin_family\|PF01805+71-122_173-224+Surp_module\|PF12230+243-486+Pre-mRNA_splicing_factor_PRP21_like_protein	G3DSA:1.10.10.790:FF:000001+168-226+Splicing_factor_3a,_subunit_1\|G3DSA:1.10.10.790:FF:000002+57-128+Splicing_factor_3A_subunit_1	PTHR15316+45-810+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-63;322-759;813-818	2.000	64-321;760-812	8rm5_7	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.719	91449.850	6.599	1.000	26.528	7.946	48.411	51.589	13.936	12.592	49.144

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	paleturquoise	3326.421	5515.404	3547.193	3478.715	3962.108	3470.715	4272.361	3020.382	3970.937	1349.809	2473.150

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.866	-0.802	—	0.156	-0.176	0.310	-0.304	0.642	—	—	—	—	—

No JSON data available for plots.

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