Hg_chrom2_TN10mRNA_3256
Organism: Heterodera glycines Gene Locus: chr2:6047251-6057907 Feature type: polypeptideProtein Sequence
Length: 2,169
(Signal peptide: 1-20)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.606 | 1.587 | 0.821 | 0.572 | 1.76 | 1.206 | 0.456 | 0.761 | 1.527 | 1.508 | 1.621 | 1.709 | 1.524 | 0.434 | 0.828 | 0.869 | 0.726 | 0.51 | 0.851 | 0.814 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3116
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
nucleus
|
KKRK,LGEV,PCQKRRA,RKNMDEALNRIKKMTK,KRLFGHYYNSVVNPCQKRR,EKKKKKSKKNKKKKIGKEKSEK
|
— | — | — | — |
1-20
|
0.957
|
0.997
|
0.000
|
0.000
|
0.607
|
0.177
|
0.008
|
0.588
|
0.093
|
0.135
|
0.166
|
0.031
|
0.091
|
0.096
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003299
|
1.000
|
2.000
|
Hsc_gene_24489.t1;Hsc_gene_24489.t2
|
— | — | — |
KAI3420075.1 polynucleotide adenylyltransferase [Globodera pallida]
|
No
|
0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003723|GO:0016779|GO:0031123|GO:1990817
|
GO:0005575_0.747|GO:0110165_0.740|GO:0005622_0.717|GO:0043226_0.664|GO:0016020_0.656|GO:0043229_0.649|GO:0008150_0.620|GO:0043227_0.584|GO:0043231_0.570|GO:0003674_0.544|GO:0009987_0.519
|
IPR002934+1690-1740+|IPR007012+1866-2004+|IPR011068+2009-2105+|IPR043519+1664-1819_1668-1789+
|
— |
PF01909+1690-1740+Nucleotidyltransferase_domain|PF04928+1866-2004+Poly(A)_polymerase_central_domain
|
— |
PTHR10682+1689-2111+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1316-1431;2165-2169
|
2.000
|
1-1315;1432-2164
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.557
|
252787.560
|
6.992
|
9.500
|
31.351
|
10.881
|
53.389
|
46.611
|
16.275
|
15.076
|
38.174
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |