Hg_chrom2_TN10mRNA_3258
Organism: Heterodera glycines Gene Locus: chr2:6068968-6075380 Feature type: polypeptideProtein Sequence
Length: 613
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.043 | 0.797 | 1.513 | 0.394 | 1.006 | 1.38 | 0.699 | 1.06 | 0.87 | 1.058 | 0.593 | 0.768 | 1.813 | 1.004 | 1.232 | 1.235 | 0.936 | 1.038 | 1.004 | 0.432 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3118
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_Clustered
|
0.914
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
nucleus
|
— |
FKRR
|
32-78
|
0.975
|
— | — | — | — |
0.000
|
— | — |
0.586
|
0.161
|
0.022
|
0.414
|
0.123
|
0.397
|
0.188
|
0.065
|
0.141
|
0.203
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006797
|
1.000
|
1.000
|
Hsc_gene_24490.t1
|
Hsc_gene_24490.t1
|
— | — |
KAH7715547.1 nudC domain-containing protein 1-like protein [Aphelenchus avenae]
|
No
|
-0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.885|GO:0110165_0.877|GO:0016020_0.806|GO:0005622_0.802|GO:0005737_0.759|GO:0043226_0.746|GO:0043229_0.726|GO:0043227_0.721|GO:0043231_0.701|GO:0005634_0.603|GO:0005829_0.601|GO:0031974_0.572|GO:0043233_0.571|GO:0070013_0.569|GO:0031981_0.564|GO:0005654_0.557
|
IPR037895+17-190+
|
— | — | — |
PTHR21664+17-190+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
177-233;361-434
|
3.000
|
1-176;234-360;435-613
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.579
|
68079.920
|
4.710
|
-20.500
|
26.427
|
11.419
|
49.592
|
50.408
|
12.072
|
14.356
|
54.160
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
darkgrey
|
1768.731
|
1716.647
|
1208.652
|
1570.625
|
1989.442
|
2332.110
|
3531.364
|
1529.573
|
622.238
|
2067.115
|
1447.882
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.736
|
-0.265
|
0.486
|
0.309
|
0.244
|
0.609
|
-0.715
|
1.351
|
— | — | — | — | — |
No JSON data available for plots.