Hg_chrom2_TN10mRNA_3261
Organism: Heterodera glycines Gene Locus: chr2:6085740-6087745 Feature type: polypeptideProtein Sequence
Length: 470
(Signal peptide: 1-29)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.94 | 1.484 | 0.696 | 0.514 | 0.426 | 0.655 | 1.216 | 0.957 | 0.946 | 0.978 | 0.677 | 0.876 | 0.709 | 0.655 | 0.304 | 2.523 | 1.081 | 1.064 | 2.291 | 1.126 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3121
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — |
Hg_chrom2_TN10mRNA_3261
|
9-Not_Clustered
|
0.945
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
— | — | — | — | — | — |
1-29
|
0.934
|
0.999
|
0.000
|
0.000
|
0.062
|
0.082
|
0.008
|
0.459
|
0.221
|
0.212
|
0.392
|
0.008
|
0.190
|
0.835
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000195
|
2.000
|
9.000
|
Hsc_gene_11336.t1;Hsc_gene_11845.t1;Hsc_gene_11846.t1;Hsc_gene_11847.t1;Hsc_gene_13569.t1;Hsc_gene_21726.t1;Hsc_gene_804.t1;Hsc_gene_805.t1;Hsc_gene_805.t2
|
— | — |
P15704.1 Endoglucanase [Clostridium saccharobutylicum]
|
QLK97578.1 endoglucanase [Heterodera glycines]
|
No
|
-0.080
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000272|GO:0004553|GO:0005975|GO:0030246
|
GO:0008150_0.963|GO:0003674_0.845|GO:0008152_0.743|GO:0044238_0.739|GO:0043170_0.730|GO:0009056_0.697|GO:0003824_0.696|GO:0016787_0.696|GO:0009057_0.691|GO:0005975_0.684|GO:0005976_0.684|GO:0044042_0.676|GO:0004553_0.674|GO:0016798_0.674|GO:0000272_0.673|GO:0016052_0.673|GO:0009251_0.670|GO:0030243_0.670|GO:0030245_0.670|GO:0051273_0.670|GO:0051275_0.670|GO:0008810_0.650
|
IPR001547+46-292+|IPR001919+392-470+|IPR008965+388-465+|IPR017853+22-331+
|
SM00637+392-470+
|
PF00150+46-292+Cellulase_(glycosyl_hydrolase_family_5)
|
— |
PTHR34142+15-329+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
335-470
|
1.000
|
1-334
|
8bqc_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.972
|
49306.590
|
6.942
|
2.500
|
14.255
|
11.277
|
47.447
|
52.553
|
7.872
|
6.383
|
64.681
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
darkgreen
|
73319.691
|
212.932
|
25684.391
|
9110.947
|
904.237
|
31.239
|
30.409
|
6785.938
|
404945.879
|
1029.204
|
174136.351
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
6.686
|
5.280
|
-1.387
|
-3.365
|
-4.840
|
— |
7.664
|
-7.665
|
8.519
|
-5.334
|
— | — | — |