Hg_chrom2_TN10mRNA_3262
Organism: Heterodera glycines Gene Locus: chr2:6088521-6089891 Feature type: polypeptideProtein Sequence
Length: 251
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.112 | 1.019 | 1.449 | 0.275 | 1.793 | 1.532 | 0.617 | 0.398 | 0.797 | 1.346 | 1.268 | 1.64 | 0.553 | 0.383 | 0.976 | 0.968 | 0.588 | 0.785 | 0.613 | 1.406 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3122
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
Hg_chrom2_TN10mRNA_3262
|
6-pJ2_J3_J4_Male
|
0.990
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.488
|
0.271
|
0.047
|
0.674
|
0.157
|
0.367
|
0.497
|
0.088
|
0.132
|
0.224
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003300
|
2.000
|
1.000
|
Hsc_gene_19470.t1
|
Hsc_gene_19470.t1
|
F52D10.3a
|
Q20655.1 14-3-3-like protein 2 [Caenorhabditis elegans]
|
AEG64708.1 14-3-3 protein [Heterodera glycines]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.916|GO:0005575_0.854|GO:0110165_0.845|GO:0009987_0.816|GO:0003674_0.746|GO:0005622_0.743|GO:0005488_0.740|GO:0065007_0.683|GO:0005515_0.648|GO:0005737_0.648|GO:0050789_0.639|GO:0043226_0.618|GO:0051179_0.601|GO:0050794_0.597|GO:0016020_0.596
|
IPR000308+1-243_5-235_37-66_84-108_115-137_150-176_177-203_204-233+|IPR023409+43-53_213-232+|IPR023410+5-244_12-231+|IPR036815+1-244_4-233+
|
SM00101+5-244+
|
PF00244+12-231+14-3-3_protein
|
G3DSA:1.20.190.20:FF:000001+1-241+14-3-3_gamma_1
|
PTHR18860+5-235+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-22;234-251
|
1.000
|
23-233
|
9mmr_D
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.806
|
28473.810
|
4.490
|
-13.000
|
32.669
|
8.367
|
53.386
|
46.614
|
13.944
|
18.725
|
45.418
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
18714.859
|
8326.666
|
20953.383
|
20802.401
|
26554.761
|
21760.521
|
18741.374
|
24665.230
|
11370.203
|
20173.230
|
16400.504
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.103
|
1.184
|
— |
0.320
|
-0.272
|
-0.204
|
— |
-0.252
|
— | — | — | — | — |
No JSON data available for plots.