Hg_chrom2_TN10mRNA_3263
Organism: Heterodera glycines Gene Locus: chr2:6095668-6098229 Feature type: polypeptideProtein Sequence
Length: 334
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.323 | 0.836 | 0.871 | 1.445 | 0.898 | 0.921 | 0.57 | 1.796 | 0.931 | 1.376 | 0.318 | 0.881 | 1.663 | 0.979 | 1.894 | 1.069 | 0.589 | 0.998 | 1.382 | 0.264 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3123
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
Hg_chrom2_TN10mRNA_3263
|
11-Not_described
|
0.973
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— | — |
61-81
|
0.999
|
13-52
|
0.996
|
— | — |
0.012
|
— | — |
0.160
|
0.428
|
0.124
|
0.295
|
0.808
|
0.255
|
0.410
|
0.052
|
0.140
|
0.185
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — |
KAI1700811.1 aspartyl/Asparaginyl beta-hydroxylase domain-containing protein [Ditylenchus destructor]
|
No
|
-0.080
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0018193
|
GO:0005575_0.860|GO:0110165_0.860|GO:0008150_0.737|GO:0016020_0.643|GO:0005622_0.574|GO:0005737_0.533|GO:0009987_0.505
|
IPR007803+126-314+|IPR027443+103-326+|IPR051821+37-201+
|
— |
PF05118+126-314+Aspartyl/Asparaginyl_beta-hydroxylase
|
— |
PTHR46332+37-201+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-334
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.728
|
37392.890
|
8.029
|
10.000
|
25.150
|
12.275
|
43.413
|
56.587
|
14.970
|
10.180
|
51.497
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
grey
|
550.359
|
574.607
|
475.029
|
426.967
|
518.429
|
418.626
|
1020.183
|
307.116
|
454.562
|
664.037
|
574.263
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.504
|
-0.566
|
— |
0.248
|
-0.294
|
1.295
|
-0.552
|
1.874
|
— | — | — | — | — |
No JSON data available for plots.