Hg_chrom2_TN10mRNA_3268
Organism: Heterodera glycines Gene Locus: chr2:6119724-6123308 Feature type: polypeptideProtein Sequence
Length: 333
(Signal peptide: 1-24)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.733 | 0.629 | 1.092 | 0.414 | 0.751 | 0.924 | 0.608 | 2.102 | 1.401 | 1.38 | 1.047 | 0.883 | 2.169 | 1.444 | 0.919 | 0.815 | 0.886 | 0.865 | 3.003 | 0.265 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3128
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
Hg_chrom2_TN10mRNA_3268
|
16-Females_and_Males
|
0.989
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
cytoplasm|endoplasmic_reticulum
|
— | — | — | — | — | — |
1-24
|
0.974
|
0.716
|
0.000
|
0.000
|
0.201
|
0.435
|
0.517
|
0.538
|
0.775
|
0.407
|
0.620
|
0.012
|
0.204
|
0.101
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
Q965X9.1 N-acyl-phosphatidylethanolamine-hydrolyzing phospholipase D 2 [Caenorhabditis elegans]
|
KAI6223556.1 N-acetylphosphatidylethanolamine-hydrolyzing phospholipase D [Aphelenchoides fujianensis]
|
No
|
-0.120
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.841|GO:0005575_0.811|GO:0110165_0.811|GO:0003674_0.713|GO:0008152_0.690|GO:0016020_0.645|GO:0003824_0.613|GO:0071944_0.540|GO:0005622_0.536|GO:0016787_0.536|GO:0009987_0.534|GO:0005886_0.519|GO:0005737_0.518|GO:0016788_0.517|GO:0052689_0.503
|
IPR001279+117-322+|IPR036866+83-333_99-327+
|
— |
PF12706+117-322+Beta-lactamase_superfamily_domain
|
— |
PTHR15032+26-329+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-333
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.713
|
38309.340
|
8.513
|
10.000
|
26.126
|
16.817
|
43.544
|
56.456
|
15.616
|
10.511
|
45.646
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkred
|
yellow
|
1164.600
|
653.379
|
907.680
|
752.223
|
865.210
|
1029.715
|
1358.316
|
1470.317
|
2144.894
|
847.640
|
1403.606
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.245
|
— |
-0.163
|
0.170
|
0.266
|
0.411
|
0.408
|
— | — |
-1.349
|
— | — | — |