Hg_chrom2_TN10mRNA_3270
Organism: Heterodera glycines Gene Locus: chr2:6129342-6132658 Feature type: polypeptideProtein Sequence
Length: 492
(Signal peptide: 1-20)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.898 | 1.513 | 0.517 | 0.35 | 0.949 | 0.834 | 0.774 | 1.321 | 1.084 | 1.154 | 0.616 | 1.554 | 1.637 | 0.821 | 0.954 | 1.742 | 1.0 | 1.047 | 1.094 | 0.658 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3130
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — |
Hg_chrom2_TN10mRNA_3270
|
17-ppJ2_pJ2
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
— | — | — | — | — | — |
1-20
|
0.886
|
0.717
|
0.000
|
0.000
|
0.163
|
0.388
|
0.052
|
0.304
|
0.232
|
0.184
|
0.135
|
0.078
|
0.405
|
0.653
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003302
|
2.000
|
1.000
|
Hsc_gene_21893.t1
|
— | — |
Q9ZBU1.1 Alditol oxidase [Streptomyces coelicolor A3(2)]
|
KAI1703529.1 FAD binding domain-containing protein [Ditylenchus destructor]
|
MEN9729789
|
0.080
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003885|GO:0016020|GO:0016899|GO:0050660|GO:0071949
|
GO:0008150_0.826|GO:0003674_0.707|GO:0008152_0.656|GO:0009987_0.612|GO:0005575_0.579|GO:0110165_0.575|GO:0003824_0.573|GO:0044281_0.565|GO:0006766_0.545|GO:0016491_0.517|GO:0016020_0.510
|
IPR006094+89-213+|IPR007173+354-484+|IPR010031+64-317_67-488_354-489+|IPR016166+82-246+|IPR016167+68-134+|IPR016169+136-257+|IPR016171+455-486+|IPR036318+72-245+
|
— |
PF01565+89-213+FAD_binding_domain|PF04030+354-484+D-arabinono-1,4-lactone_oxidase
|
— |
PTHR43762+67-488+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-492
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.890
|
54135.260
|
7.815
|
7.500
|
19.919
|
12.195
|
47.967
|
52.033
|
11.382
|
8.537
|
54.065
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
darkgreen
|
962.588
|
9.601
|
910.133
|
986.323
|
142.489
|
15.709
|
47.083
|
279.430
|
3889.202
|
397.882
|
1894.162
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
6.343
|
6.546
|
— |
-2.824
|
-3.166
|
1.595
|
4.056
|
-2.429
|
3.177
|
— | — | — | — |