Hg_chrom2_TN10mRNA_3271
Organism: Heterodera glycines Gene Locus: chr2:6133065-6136811 Feature type: polypeptideProtein Sequence
Length: 547
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.659 | 0.893 | 0.897 | 0.504 | 1.432 | 0.984 | 0.566 | 0.731 | 1.625 | 1.359 | 0.942 | 1.936 | 2.539 | 0.914 | 1.38 | 0.653 | 0.779 | 0.831 | 0.422 | 0.753 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3131
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
Hg_chrom2_TN10mRNA_3271
|
13-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— |
RRVRNRITPAFTTGKLKKL
|
— | — | — | — | — | — |
0.000
|
— | — |
0.110
|
0.412
|
0.062
|
0.105
|
0.894
|
0.118
|
0.115
|
0.005
|
0.181
|
0.060
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001837
|
3.000
|
1.000
|
Hsc_gene_1664.t1
|
— | — |
Q9JMA7.2 Cytochrome P450 3A41 [Mus musculus]
|
KAI3412148.1 Cytochrome P450 3A4 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004497|GO:0005506|GO:0016705|GO:0020037
|
GO:0008150_0.881|GO:0003674_0.582|GO:0050896_0.582|GO:0009987_0.575|GO:0005575_0.540|GO:0110165_0.535
|
IPR001128+56-539_355-372_408-419_483-492_492-503+|IPR002401+344-361_364-390_407-425_447-471_482-492_492-515+|IPR017972+485-494+|IPR036396+39-546_55-544+|IPR050705+25-545+
|
— |
PF00067+56-539+Cytochrome_P450
|
G3DSA:1.10.630.10:FF:000042+39-546+Cytochrome_P450
|
PTHR24302+25-545+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-547
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.495
|
63644.890
|
6.697
|
1.000
|
27.971
|
13.711
|
44.973
|
55.027
|
14.442
|
13.528
|
40.219
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
1938.986
|
4664.280
|
2299.284
|
558.323
|
248.928
|
137.330
|
142.749
|
10478.046
|
126.192
|
1440.066
|
876.977
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.250
|
-3.200
|
-1.934
|
-1.195
|
-0.846
|
— |
6.172
|
-6.064
|
-3.650
|
— | — | — | — |
No JSON data available for plots.