Hg_chrom2_TN10mRNA_3278
Organism: Heterodera glycines Gene Locus: chr2:6172250-6175306 Feature type: polypeptideProtein Sequence
Length: 618
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.583 | 1.543 | 1.118 | 0.335 | 1.321 | 2.489 | 0.674 | 0.809 | 0.791 | 0.612 | 0.834 | 1.047 | 1.034 | 0.965 | 1.387 | 0.902 | 0.981 | 0.466 | 1.618 | 2.332 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3136
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
17-ppJ2_pJ2
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
extracellular
|
— |
RRRKAMPTVNTKRIRT,KRIGHFINQGAINRRRKAM
|
8-38
|
0.976
|
— | — | — | — |
0.000
|
— | — |
0.236
|
0.056
|
0.018
|
0.401
|
0.113
|
0.081
|
0.043
|
0.005
|
0.273
|
0.531
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003304
|
2.000
|
1.000
|
Hsc_gene_21952.t1
|
Hsc_gene_21952.t1
|
— |
P15704.1 Endoglucanase [Clostridium saccharobutylicum]
|
WP_107011377.1 glycoside hydrolase family 5 protein [Christiangramia fulva];AVR44599.1 glycoside hydrolase [Christiangramia fulva]
|
No
|
0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000272|GO:0004553
|
— |
IPR001547+321-570+|IPR017853+307-611+
|
— |
PF00150+321-570+Cellulase_(glycosyl_hydrolase_family_5)
|
— |
PTHR34142+309-589+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-314;616-618
|
1.000
|
315-615
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.627
|
73126.060
|
5.616
|
-6.000
|
27.994
|
15.372
|
56.634
|
43.366
|
13.916
|
14.078
|
44.822
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
507.425
|
1.348
|
69.510
|
43.297
|
12.558
|
12.724
|
20.061
|
8.877
|
552.223
|
1742.678
|
1232.483
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
5.451
|
4.862
|
-0.572
|
-1.818
|
— | — | — |
1.319
|
— |
-3.520
|
-6.805
|
— | — |
No JSON data available for plots.