Hg_chrom2_TN10mRNA_3280
Organism: Heterodera glycines Gene Locus: chr2:6188900-6194278 Feature type: polypeptideProtein Sequence
Length: 1,657
(Signal peptide: 1-20)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.056 | 0.154 | 0.099 | 0.312 | 1.69 | 0.124 | 2.033 | 0.06 | 0.094 | 0.098 | 0.128 | 0.071 | 0.084 | 6.673 | 0.037 | 1.595 | 3.146 | 0.165 | 0.093 | 0.213 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3138
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-J4_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm|extracellular
|
— | — | — | — | — | — |
1-20
|
0.998
|
1.000
|
0.000
|
0.000
|
0.249
|
0.048
|
0.023
|
0.531
|
0.038
|
0.053
|
0.019
|
0.005
|
0.341
|
0.693
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000383
|
3.000
|
5.000
|
Hsc_gene_17951.t1;Hsc_gene_17956.t1;Hsc_gene_17963.t1;Hsc_gene_9269.t1;Hsc_gene_9269.t2
|
— | — | — | — |
WP_167387447
|
inf
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
38-1518;1629-1657
|
2.000
|
1-37;1519-1628
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.951
|
157190.300
|
3.186
|
-159.000
|
11.829
|
1.267
|
43.331
|
56.669
|
1.147
|
10.682
|
85.818
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
orange
|
skyblue
|
6054.725
|
9.665
|
20.435
|
13.856
|
8.215
|
16804.251
|
53480.901
|
161.719
|
22.823
|
35.163
|
29.874
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.852
|
— | — |
-0.783
|
11.007
|
1.681
|
-6.837
|
8.524
|
— | — | — | — | — |