Hg_chrom2_TN10mRNA_3281
Organism: Heterodera glycines Gene Locus: chr2:6195710-6201064 Feature type: polypeptideProtein Sequence
Length: 755
(Signal peptide: 1-23)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.909 | 0.832 | 0.939 | 0.365 | 1.501 | 1.46 | 0.741 | 1.457 | 1.148 | 1.092 | 0.923 | 1.792 | 1.214 | 0.79 | 1.865 | 0.681 | 0.934 | 0.803 | 0.713 | 0.545 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3139
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — |
Hsc_gene_21955
|
— | — |
5-Not_Clustered
|
0.788
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
nucleus
|
nucleus
|
KRKR,RRRR,KRKK
|
— | — | — | — |
1-23
|
0.741
|
1.000
|
0.000
|
0.000
|
0.815
|
0.048
|
0.038
|
0.243
|
0.086
|
0.075
|
0.086
|
0.034
|
0.084
|
0.334
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000534
|
6.000
|
1.000
|
Hsc_gene_21955.t1
|
Hsc_gene_21955.t1
|
— |
P35668.1 Glutathione synthetase [Xenopus laevis]
|
5OEU_A Chain A, Glutathione synthetase-like effector 22 (Gpa-GSS22-closed) [Globodera pallida];5OEU_C Chain C, Glutathione synthetase-like effector 22 (Gpa-GSS22-closed) [Globodera pallida];5OEV_A Chain A, Glutathione synthetase-like effector 22 (Gpa-GSS22-apo) [Globodera pallida];5OEV_B Chain B, Glutathione synthetase-like effector 22 (Gpa-GSS22-apo) [Globodera pallida];5OEV_C Chain C, Glutathione synthetase-like effector 22 (Gpa-GSS22-apo) [Globodera pallida];5OEV_D Chain D, Glutathione synthetase-like effector 22 (Gpa-GSS22-apo) [Globodera pallida]
|
No
|
-0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004363|GO:0005524|GO:0006750|GO:0016747|GO:0016874
|
GO:0008150_0.940|GO:0003674_0.879|GO:0008152_0.799|GO:0009987_0.772|GO:0005575_0.695|GO:0110165_0.695|GO:0050896_0.682|GO:0044237_0.656|GO:0009058_0.652|GO:0044249_0.627|GO:0003824_0.618|GO:0006518_0.546|GO:0006575_0.546|GO:0006749_0.546|GO:0006750_0.546|GO:0006790_0.546|GO:0019184_0.546|GO:0042398_0.546|GO:0043043_0.546|GO:0043603_0.546|GO:0043604_0.546|GO:0044272_0.546|GO:0016874_0.534|GO:0004363_0.530|GO:0016879_0.530|GO:0016881_0.530|GO:1904091_0.530|GO:0005622_0.524
|
IPR000182+39-232_120-209+|IPR004887+486-587+|IPR005615+278-693_284-693+|IPR014042+343-625+|IPR014049+286-462+|IPR014709+626-693+|IPR016181+37-217+|IPR016185+484-589+|IPR037013+463-589+
|
— |
PF00583+120-209+Acetyltransferase_(GNAT)_family|PF03199+486-587+Eukaryotic_glutathione_synthase|PF03917+284-693+Eukaryotic_glutathione_synthase,_ATP_binding_domain
|
— |
PTHR11130+278-693+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
221-274;658-755
|
2.000
|
1-220;275-657
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.644
|
86503.410
|
8.898
|
19.000
|
32.318
|
10.066
|
52.053
|
47.947
|
18.146
|
14.172
|
43.709
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
purple
|
382.322
|
415.007
|
314.272
|
756.189
|
493.692
|
373.127
|
333.193
|
294.248
|
160.577
|
434.827
|
317.291
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.630
|
0.729
|
1.375
|
-0.647
|
-0.389
|
— |
-0.449
|
0.322
|
— | — | — | — | — |