Hg_chrom2_TN10mRNA_3282
Organism: Heterodera glycines Gene Locus: chr2:6195710-6201064 Feature type: polypeptideProtein Sequence
Length: 770
(Signal peptide: 1-23)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.891 | 0.846 | 0.921 | 0.358 | 1.494 | 1.432 | 0.727 | 1.494 | 1.154 | 1.106 | 0.925 | 1.833 | 1.19 | 0.799 | 1.882 | 0.686 | 0.937 | 0.826 | 0.699 | 0.535 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3139
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — |
Hsc_gene_21955
|
— | — |
5-Not_Clustered
|
0.788
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
nucleus
|
nucleus
|
KRKR,RRRR,KRKK
|
— | — | — | — |
1-23
|
0.741
|
1.000
|
0.000
|
0.000
|
0.813
|
0.053
|
0.038
|
0.230
|
0.068
|
0.079
|
0.090
|
0.034
|
0.070
|
0.328
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000534
|
6.000
|
1.000
|
Hsc_gene_21955.t1
|
Hsc_gene_21955.t1
|
— |
P35668.1 Glutathione synthetase [Xenopus laevis]
|
5OEU_A Chain A, Glutathione synthetase-like effector 22 (Gpa-GSS22-closed) [Globodera pallida];5OEU_C Chain C, Glutathione synthetase-like effector 22 (Gpa-GSS22-closed) [Globodera pallida];5OEV_A Chain A, Glutathione synthetase-like effector 22 (Gpa-GSS22-apo) [Globodera pallida];5OEV_B Chain B, Glutathione synthetase-like effector 22 (Gpa-GSS22-apo) [Globodera pallida];5OEV_C Chain C, Glutathione synthetase-like effector 22 (Gpa-GSS22-apo) [Globodera pallida];5OEV_D Chain D, Glutathione synthetase-like effector 22 (Gpa-GSS22-apo) [Globodera pallida]
|
No
|
-0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004363|GO:0005524|GO:0006750|GO:0016747|GO:0016874
|
GO:0008150_0.941|GO:0003674_0.880|GO:0008152_0.802|GO:0009987_0.774|GO:0005575_0.694|GO:0110165_0.694|GO:0050896_0.681|GO:0044237_0.658|GO:0009058_0.656|GO:0044249_0.630|GO:0003824_0.619|GO:0006518_0.546|GO:0006575_0.546|GO:0006749_0.546|GO:0006750_0.546|GO:0006790_0.546|GO:0019184_0.546|GO:0042398_0.546|GO:0043043_0.546|GO:0043603_0.546|GO:0043604_0.546|GO:0044272_0.546|GO:0016874_0.534|GO:0004363_0.530|GO:0016879_0.530|GO:0016881_0.530|GO:1904091_0.530|GO:0005622_0.523|GO:0005488_0.502
|
IPR000182+39-232_120-209+|IPR004887+501-602+|IPR005615+293-708_299-708+|IPR014042+358-640+|IPR014049+301-477+|IPR014709+641-708+|IPR016181+37-217+|IPR016185+499-604+|IPR037013+478-604+
|
— |
PF00583+120-209+Acetyltransferase_(GNAT)_family|PF03199+501-602+Eukaryotic_glutathione_synthase|PF03917+299-708+Eukaryotic_glutathione_synthase,_ATP_binding_domain
|
— |
PTHR11130+293-708+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
235-289;673-770
|
2.000
|
1-234;290-672
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.661
|
88278.550
|
9.158
|
21.500
|
32.338
|
10.000
|
52.078
|
47.922
|
18.312
|
14.026
|
43.636
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
purple
|
382.322
|
415.007
|
314.272
|
756.189
|
493.692
|
373.127
|
333.193
|
294.248
|
160.577
|
434.827
|
317.291
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.630
|
0.729
|
1.375
|
-0.647
|
-0.389
|
— |
-0.449
|
0.322
|
— | — | — | — | — |