SCN Proteipedia

Hg_chrom2_TN10mRNA_3283

Organism: Heterodera glycines Gene Locus: chr2:6196931-6201064 Feature type: polypeptide

Protein Sequence

Length: 755

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.893	0.801	0.939	0.32	1.523	1.426	0.757	1.523	1.148	1.092	0.963	1.87	1.03	0.815	1.919	0.7	0.912	0.803	0.713	0.545	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom2_TN10gene_3139	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	Yes	—	—	Hsc_gene_21955	—	—	5-Not_Clustered	0.788

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	KRKR,RRRR,KRKK	—	—	—	—	—	—	0.000	—	—	0.809	0.059	0.034	0.240	0.072	0.091	0.099	0.036	0.065	0.369

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0000534	6.000	1.000	Hsc_gene_21955.t1	Hsc_gene_21955.t1	—	P35668.1 Glutathione synthetase [Xenopus laevis]	5OEU_A Chain A, Glutathione synthetase-like effector 22 (Gpa-GSS22-closed) [Globodera pallida];5OEU_C Chain C, Glutathione synthetase-like effector 22 (Gpa-GSS22-closed) [Globodera pallida];5OEV_A Chain A, Glutathione synthetase-like effector 22 (Gpa-GSS22-apo) [Globodera pallida];5OEV_B Chain B, Glutathione synthetase-like effector 22 (Gpa-GSS22-apo) [Globodera pallida];5OEV_C Chain C, Glutathione synthetase-like effector 22 (Gpa-GSS22-apo) [Globodera pallida];5OEV_D Chain D, Glutathione synthetase-like effector 22 (Gpa-GSS22-apo) [Globodera pallida]	No	-0.030

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004363\|GO:0005524\|GO:0006750\|GO:0016747\|GO:0016874	GO:0008150_0.938\|GO:0003674_0.883\|GO:0008152_0.815\|GO:0009987_0.774\|GO:0005575_0.690\|GO:0110165_0.690\|GO:0050896_0.676\|GO:0044237_0.668\|GO:0009058_0.666\|GO:0044249_0.639\|GO:0003824_0.621\|GO:0006518_0.546\|GO:0006575_0.546\|GO:0006749_0.546\|GO:0006750_0.546\|GO:0006790_0.546\|GO:0019184_0.546\|GO:0042398_0.546\|GO:0043043_0.546\|GO:0043603_0.546\|GO:0043604_0.546\|GO:0044272_0.546\|GO:0005622_0.539\|GO:0016874_0.534\|GO:0004363_0.530\|GO:0016879_0.530\|GO:0016881_0.530\|GO:1904091_0.530\|GO:0005488_0.507	IPR000182+24-217_105-194+\|IPR004887+486-587+\|IPR005615+278-693_284-693+\|IPR014042+343-625+\|IPR014049+286-462+\|IPR014709+626-693+\|IPR016181+22-202+\|IPR016185+484-589+\|IPR037013+463-589+	—	PF00583+105-194+Acetyltransferase_(GNAT)_family\|PF03199+486-587+Eukaryotic_glutathione_synthase\|PF03917+284-693+Eukaryotic_glutathione_synthase,_ATP_binding_domain	—	PTHR11130+278-693+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	220-274;658-755	2.000	1-219;275-657	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.680	86457.390	9.361	22.500	33.113	9.536	52.583	47.417	18.808	14.305	43.576

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	magenta	purple	382.322	415.007	314.272	756.189	493.692	373.127	333.193	294.248	160.577	434.827	317.291

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.630	0.729	1.375	-0.647	-0.389	—	-0.449	0.322	—	—	—	—	—

No JSON data available for plots.

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