Hg_chrom2_TN10mRNA_3285
Organism: Heterodera glycines Gene Locus: chr2:6201890-6207426 Feature type: polypeptideProtein Sequence
Length: 1,023
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.546 | 1.478 | 0.835 | 0.506 | 1.906 | 1.178 | 0.535 | 0.684 | 1.716 | 1.176 | 1.94 | 1.725 | 1.575 | 0.432 | 0.718 | 0.894 | 0.641 | 0.548 | 1.278 | 0.575 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3140
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KKNLWLNLMDKRSTK,RKTIDQFRVPKRNKN,RKNSKNKEKEKIREKKG,NKKAKKKEKATKKGAKNGKEKEKSNNKKGKKEMTEKRSNELGEEKEDKKEGKTPKKGTKK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.627
|
0.250
|
0.010
|
0.626
|
0.084
|
0.078
|
0.086
|
0.011
|
0.114
|
0.095
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006801
|
1.000
|
1.000
|
Hsc_gene_21956.t1
|
Hsc_gene_21956.t1
|
— | — |
KAF7635929.1 PAP_central domain-containing protein, partial [Meloidogyne graminicola]
|
No
|
0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:1990817
|
GO:0005575_0.747|GO:0110165_0.747|GO:0005622_0.709|GO:0016020_0.659|GO:0043226_0.654|GO:0043229_0.635|GO:0043227_0.591|GO:0008150_0.586|GO:0043231_0.557|GO:0003674_0.509
|
IPR007012+743-880+|IPR043519+551-711_604-728+
|
— |
PF04928+743-880+Poly(A)_polymerase_central_domain|PF22600+565-688+Poly(A)_RNA_polymerase,_mitochondrial-like,_central_palm_domain
|
— |
PTHR10682+589-967+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
124-311
|
2.000
|
1-123;312-1023
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.616
|
119320.110
|
7.841
|
10.000
|
33.724
|
10.655
|
54.839
|
45.161
|
17.693
|
16.031
|
37.634
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.