SCN Proteipedia

Hg_chrom2_TN10mRNA_3287

Organism: Heterodera glycines Gene Locus: chr2:6208175-6212448 Feature type: polypeptide

Protein Sequence

Length: 770

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.876	0.906	1.015	0.269	1.58	1.365	0.773	1.104	1.097	1.176	0.925	1.833	1.118	0.824	1.643	0.668	0.937	0.925	0.699	0.611	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom2_TN10gene_3142	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	Yes	—	—	Hsc_gene_21955	—	—	21-pJ2_J3	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	SRKGTKRGREEEKGKAPEGESIGKRKR	—	—	—	—	—	—	0.000	—	—	0.837	0.052	0.016	0.245	0.071	0.103	0.112	0.058	0.058	0.327

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0000534	6.000	1.000	Hsc_gene_21955.t1	Hsc_gene_21955.t1	—	P35668.1 Glutathione synthetase [Xenopus laevis]	5OEU_A Chain A, Glutathione synthetase-like effector 22 (Gpa-GSS22-closed) [Globodera pallida];5OEU_C Chain C, Glutathione synthetase-like effector 22 (Gpa-GSS22-closed) [Globodera pallida];5OEV_A Chain A, Glutathione synthetase-like effector 22 (Gpa-GSS22-apo) [Globodera pallida];5OEV_B Chain B, Glutathione synthetase-like effector 22 (Gpa-GSS22-apo) [Globodera pallida];5OEV_C Chain C, Glutathione synthetase-like effector 22 (Gpa-GSS22-apo) [Globodera pallida];5OEV_D Chain D, Glutathione synthetase-like effector 22 (Gpa-GSS22-apo) [Globodera pallida]	No	-0.050

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004363\|GO:0005524\|GO:0006750\|GO:0016747\|GO:0016874	GO:0008150_0.947\|GO:0003674_0.873\|GO:0008152_0.814\|GO:0009987_0.776\|GO:0005575_0.693\|GO:0110165_0.689\|GO:0050896_0.674\|GO:0044237_0.665\|GO:0009058_0.661\|GO:0044249_0.638\|GO:0003824_0.616\|GO:0006790_0.552\|GO:0006518_0.548\|GO:0006575_0.548\|GO:0006749_0.548\|GO:0006750_0.548\|GO:0019184_0.548\|GO:0042398_0.548\|GO:0043043_0.548\|GO:0043603_0.548\|GO:0043604_0.548\|GO:0044272_0.548\|GO:0005622_0.542\|GO:0016874_0.537\|GO:0004363_0.532\|GO:0016879_0.532\|GO:0016881_0.532\|GO:1904091_0.532	IPR000182+31-224_112-201+\|IPR004887+493-594+\|IPR005615+285-751_291-751+\|IPR014042+350-632+\|IPR014049+293-712+\|IPR014709+633-700+\|IPR016181+29-209+\|IPR016185+491-596+\|IPR037013+470-596+	—	PF00583+112-201+Acetyltransferase_(GNAT)_family\|PF03199+493-594+Eukaryotic_glutathione_synthase\|PF03917+291-751+Eukaryotic_glutathione_synthase,_ATP_binding_domain	—	PTHR11130+285-751+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-19;227-281	2.000	20-226;282-770	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.526	87656.600	6.661	1.500	31.429	9.221	51.039	48.961	16.364	15.065	45.065

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	magenta	pink	782.532	221.161	150.525	1855.708	868.062	310.696	269.997	202.487	533.643	1568.858	1125.194

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.784	2.931	3.731	-1.128	-1.466	—	-0.728	0.560	—	—	—	—	—

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