Hg_chrom2_TN10mRNA_3288
Organism: Heterodera glycines Gene Locus: chr2:6208175-6213103 Feature type: polypeptideProtein Sequence
Length: 778
(Signal peptide: 1-23)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.882 | 0.927 | 1.005 | 0.31 | 1.542 | 1.384 | 0.734 | 1.093 | 1.114 | 1.198 | 0.857 | 1.739 | 1.285 | 0.791 | 1.626 | 0.661 | 0.969 | 0.954 | 0.692 | 0.605 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3142
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — |
Hsc_gene_21955
|
— | — |
21-pJ2_J3
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
nucleus
|
nucleus
|
SRKGTKRGREEEKGKAPEGESIGKRKR
|
— | — | — | — |
1-23
|
0.691
|
0.998
|
0.000
|
0.000
|
0.866
|
0.046
|
0.020
|
0.210
|
0.070
|
0.094
|
0.103
|
0.066
|
0.057
|
0.293
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000534
|
6.000
|
1.000
|
Hsc_gene_21955.t1
|
Hsc_gene_21955.t1
|
— |
P35668.1 Glutathione synthetase [Xenopus laevis]
|
5OEU_A Chain A, Glutathione synthetase-like effector 22 (Gpa-GSS22-closed) [Globodera pallida];5OEU_C Chain C, Glutathione synthetase-like effector 22 (Gpa-GSS22-closed) [Globodera pallida];5OEV_A Chain A, Glutathione synthetase-like effector 22 (Gpa-GSS22-apo) [Globodera pallida];5OEV_B Chain B, Glutathione synthetase-like effector 22 (Gpa-GSS22-apo) [Globodera pallida];5OEV_C Chain C, Glutathione synthetase-like effector 22 (Gpa-GSS22-apo) [Globodera pallida];5OEV_D Chain D, Glutathione synthetase-like effector 22 (Gpa-GSS22-apo) [Globodera pallida]
|
No
|
-0.050
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004363|GO:0005524|GO:0006750|GO:0016747|GO:0016874
|
GO:0008150_0.949|GO:0003674_0.869|GO:0008152_0.802|GO:0009987_0.776|GO:0005575_0.696|GO:0110165_0.692|GO:0050896_0.679|GO:0044237_0.655|GO:0009058_0.651|GO:0044249_0.628|GO:0003824_0.616|GO:0006790_0.552|GO:0006518_0.548|GO:0006575_0.548|GO:0006749_0.548|GO:0006750_0.548|GO:0019184_0.548|GO:0042398_0.548|GO:0043043_0.548|GO:0043603_0.548|GO:0043604_0.548|GO:0044272_0.548|GO:0016874_0.537|GO:0004363_0.532|GO:0016879_0.532|GO:0016881_0.532|GO:1904091_0.532|GO:0005622_0.526|GO:0042221_0.502
|
IPR000182+39-232_120-209+|IPR004887+501-602+|IPR005615+293-759_299-759+|IPR014042+358-640+|IPR014049+301-720+|IPR014709+641-708+|IPR016181+37-217+|IPR016185+499-604+|IPR037013+478-604+
|
— |
PF00583+120-209+Acetyltransferase_(GNAT)_family|PF03199+501-602+Eukaryotic_glutathione_synthase|PF03917+299-759+Eukaryotic_glutathione_synthase,_ATP_binding_domain
|
— |
PTHR11130+293-759+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
235-289
|
2.000
|
1-234;290-778
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.500
|
88692.840
|
6.475
|
-0.500
|
30.591
|
9.769
|
50.514
|
49.486
|
15.810
|
14.781
|
45.116
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
pink
|
782.532
|
221.161
|
150.525
|
1855.708
|
868.062
|
310.696
|
269.997
|
202.487
|
533.643
|
1568.858
|
1125.194
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.784
|
2.931
|
3.731
|
-1.128
|
-1.466
|
— |
-0.728
|
0.560
|
— | — | — | — | — |