Hg_chrom2_TN10mRNA_3290
Organism: Heterodera glycines Gene Locus: chr2:6222445-6229427 Feature type: polypeptideProtein Sequence
Length: 579
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.165 | 1.325 | 0.659 | 0.238 | 0.604 | 2.214 | 1.336 | 1.295 | 1.343 | 0.817 | 0.497 | 1.626 | 0.672 | 1.395 | 0.811 | 1.086 | 0.906 | 0.445 | 0.133 | 1.727 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3144
|
— | — |
1.222
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
15-Male
|
0.983
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — |
50-70
|
0.988
|
— | — |
0.000
|
— | — |
0.346
|
0.173
|
0.007
|
0.631
|
0.189
|
0.367
|
0.206
|
0.055
|
0.354
|
0.109
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003305
|
2.000
|
1.000
|
Hsc_gene_21953.t1
|
Hsc_gene_21953.t1
|
— |
P26256.1 Annexin-B12 [Hydra vulgaris]
|
KAI1729778.1 annexin domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005509|GO:0005544
|
GO:0005575_0.904|GO:0110165_0.898|GO:0003674_0.785|GO:0008150_0.770|GO:0016020_0.759|GO:0005488_0.691|GO:0071944_0.666|GO:0009987_0.665|GO:0005622_0.663|GO:0043226_0.631|GO:0043227_0.577|GO:0005737_0.555|GO:0043229_0.553|GO:0005886_0.551|GO:0065007_0.542|GO:0050789_0.533
|
IPR001464+287-309_327-343_354-375_437-463_517-537_561-574+|IPR018252+362-414_521-573+|IPR018502+273-344_279-342_290-342_345-416_349-414_362-414_428-500_432-498_446-498_504-575_508-573_521-573+|IPR037104+238-574_265-343_344-420_421-504_506-576+
|
SM00335+290-342_362-414_446-498_521-573+
|
PF00191+279-342_349-414_432-498_508-573+Annexin
|
G3DSA:1.10.220.10:FF:000001+505-576+Annexin|G3DSA:1.10.220.10:FF:000002+420-504+Annexin|G3DSA:1.10.220.10:FF:000003+345-419+Annexin|G3DSA:1.10.220.10:FF:000004+264-343+Annexin
|
PTHR10502+264-575+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-275
|
1.000
|
276-579
|
1aei_F
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.921
|
62292.370
|
7.598
|
7.500
|
17.098
|
11.054
|
44.560
|
55.440
|
9.845
|
7.254
|
54.577
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
turquoise
|
675.973
|
688.922
|
580.899
|
339.634
|
432.038
|
686.568
|
888.185
|
2608.410
|
58.375
|
579.354
|
356.077
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.473
|
-1.158
|
-0.668
|
0.316
|
0.682
|
0.382
|
1.827
|
-1.414
|
-3.418
|
2.703
|
— | — | — |
No JSON data available for plots.