Hg_chrom2_TN10mRNA_3293
Organism: Heterodera glycines Gene Locus: chr2:6240203-6243495 Feature type: polypeptideProtein Sequence
Length: 467
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.021 | 1.245 | 0.973 | 0.295 | 1.428 | 0.988 | 0.714 | 1.071 | 0.809 | 1.071 | 1.168 | 1.637 | 0.833 | 0.782 | 1.442 | 1.071 | 0.597 | 1.233 | 0.329 | 0.945 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3147
|
— | — |
1.222
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-Not_Clustered
|
0.730
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
EKKNATKKEAEGIERR,KKNATKKEAEGIERRAQK,RKRKINRSNKNGLKIRRRA,KRKINRSNKNGLKIRRRAD
|
— | — | — | — | — | — |
0.000
|
— | — |
0.931
|
0.148
|
0.033
|
0.222
|
0.015
|
0.005
|
0.034
|
0.004
|
0.015
|
0.118
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003303
|
2.000
|
1.000
|
Hsc_gene_21949.t1
|
Hsc_gene_21949.t1
|
— |
Q9TYV5.2 26S rRNA (cytosine-C(5))-methyltransferase nsun-1 [Caenorhabditis elegans]
|
KAH7727421.1 ribosomal RNA methyltransferase NOP2-like protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0001510|GO:0003723|GO:0006396|GO:0008168|GO:0008173|GO:0008757
|
GO:0008150_0.787|GO:0005575_0.735|GO:0110165_0.729|GO:0005622_0.677|GO:0009987_0.670|GO:0003674_0.608|GO:0016020_0.600|GO:0043226_0.600|GO:0043229_0.585|GO:0043227_0.532|GO:0043231_0.521|GO:0008152_0.518|GO:0044238_0.507|GO:0044237_0.502
|
IPR001678+158-446+|IPR011023+170-445+|IPR023267+52-449_218-232_247-257_314-326_368-384_428-445+|IPR023273+120-140_154-166_177-190+|IPR029063+129-445_234-467+|IPR049560+235-444+
|
— |
PF01189+235-444+16S_rRNA_methyltransferase_RsmB/F
|
G3DSA:3.30.70.1170:FF:000001+124-231+Ribosomal_RNA_methyltransferase_Nop2
|
PTHR22807+52-449+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-93;454-467
|
1.000
|
94-453
|
8fky_SY
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.767
|
52358.330
|
8.656
|
9.000
|
30.835
|
8.779
|
51.178
|
48.822
|
16.916
|
13.919
|
49.679
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
turquoise
|
499.087
|
310.868
|
202.324
|
389.306
|
381.436
|
307.746
|
342.259
|
147.835
|
103.048
|
1325.556
|
801.624
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.851
|
0.188
|
1.054
|
— |
-0.294
|
— |
-1.168
|
1.354
|
-3.810
|
— | — | — | — |
No JSON data available for plots.