Hg_chrom2_TN10mRNA_3294
Organism: Heterodera glycines Gene Locus: chr2:6244875-6246948 Feature type: polypeptideProtein Sequence
Length: 452
(Signal peptide: 1-16)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.669 | 1.389 | 0.845 | 1.144 | 1.401 | 1.418 | 0.685 | 0.996 | 1.573 | 1.435 | 0.972 | 1.301 | 2.028 | 0.766 | 1.4 | 0.727 | 0.689 | 0.536 | 0.511 | 0.195 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3148
|
— | — |
1.889
|
2.000
|
2.000
|
1.000
|
2.000
|
2.000
|
2.000
|
1.000
|
2.000
|
3.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-Not_Clustered
|
0.645
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide
|
cytoplasm
|
nucleus
|
KNSNRRRKRKK,RKHLSFVLLFLAKRYRIR
|
— | — | — | — |
1-16
|
0.955
|
0.999
|
1.000
|
1.000
|
0.398
|
0.052
|
0.028
|
0.425
|
0.387
|
0.315
|
0.409
|
0.025
|
0.305
|
0.191
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000385
|
2.000
|
6.000
|
Hsc_gene_21914.t1;Hsc_gene_21947.t1;Hsc_gene_9155.t1;Hsc_gene_9155.t2;Hsc_gene_9912.t1;Hsc_gene_9912.t2
|
Hsc_gene_21914.t1;Hsc_gene_21947.t1;Hsc_gene_21948.t1
|
— |
Q570X5.1 RING-H2 finger protein ATL58 [Arabidopsis thaliana]
|
XP_034583456.1 RING-H2 finger protein ATL3-like [Setaria viridis]
|
GAA0176874
|
0.180
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.880|GO:0003674_0.714|GO:0005575_0.644|GO:0110165_0.637|GO:0009987_0.582|GO:0016020_0.578|GO:0008152_0.536|GO:0043170_0.511|GO:0044238_0.504
|
IPR001841+343-387_344-386_344-387+|IPR013083+323-394+|IPR052788+261-410+
|
SM00184+344-386+
|
PF13639+343-387+Ring_finger_domain
|
— |
PTHR45798+261-410+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
392-452
|
1.000
|
1-391
|
1iym_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.662
|
51824.640
|
7.491
|
5.500
|
28.319
|
10.619
|
49.115
|
50.885
|
15.265
|
13.053
|
42.257
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
pink
|
103.234
|
25.375
|
18.993
|
27.590
|
87.108
|
11.482
|
33.072
|
8.492
|
33.248
|
347.169
|
212.631
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.644
|
— |
0.644
|
1.627
|
-2.907
|
1.535
|
— |
2.100
|
-3.514
|
— | — | — | — |