Hg_chrom2_TN10mRNA_3295
Organism: Heterodera glycines Gene Locus: chr2:6248512-6258517 Feature type: polypeptideProtein Sequence
Length: 2,125
(Signal peptide: 1-20)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.673 | 1.631 | 0.804 | 0.438 | 1.561 | 1.195 | 0.359 | 0.776 | 1.6 | 1.456 | 1.668 | 1.578 | 1.843 | 0.434 | 0.816 | 0.82 | 0.733 | 0.635 | 0.869 | 0.83 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3149
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
17-Not_Clustered
|
0.921
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
nucleus
|
nucleus
|
KKRP,KRQK,EKRR,KKFDVTNFEHKKILR,RKYAFLIIEDEKYRTK
|
— | — | — | — |
1-20
|
0.824
|
0.928
|
0.000
|
0.000
|
0.634
|
0.197
|
0.007
|
0.451
|
0.112
|
0.133
|
0.118
|
0.084
|
0.117
|
0.111
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006802
|
1.000
|
1.000
|
Hsc_gene_21943.t1
|
Hsc_gene_21943.t1
|
— | — |
KAI3420075.1 polynucleotide adenylyltransferase [Globodera pallida]
|
KAK4524702
|
0.130
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:1990817
|
GO:0005575_0.749|GO:0110165_0.748|GO:0005622_0.702|GO:0016020_0.651|GO:0043226_0.648|GO:0043229_0.628|GO:0008150_0.609|GO:0043227_0.572|GO:0043231_0.549|GO:0003674_0.527|GO:0009987_0.507
|
IPR007012+1820-1945+|IPR043519+1586-1744_1616-1782+|IPR048840+1586-1742+
|
— |
PF04928+1820-1945+Poly(A)_polymerase_central_domain|PF20750+1586-1742+Poly(A)_polymerase_nucleotidyltransferase_domain
|
— |
PTHR10682+1578-2070+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1252-1345
|
2.000
|
1-1251;1346-2125
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.632
|
248619.200
|
8.877
|
42.500
|
30.353
|
12.141
|
52.235
|
47.765
|
16.565
|
13.788
|
38.165
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
173.970
|
2.430
|
69.603
|
91.335
|
18.908
|
8.765
|
20.869
|
8.331
|
319.228
|
439.106
|
387.730
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4.607
|
5.086
|
0.498
|
-2.298
|
-1.097
|
1.256
|
— |
1.462
|
— | — |
-4.258
|
— | — |