Hg_chrom2_TN10mRNA_3297
Organism: Heterodera glycines Gene Locus: chr2:6260699-6272222 Feature type: polypeptideProtein Sequence
Length: 1,819
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.863 | 0.895 | 1.05 | 0.701 | 1.026 | 1.043 | 0.432 | 1.677 | 1.234 | 1.679 | 0.791 | 1.164 | 1.756 | 0.803 | 1.055 | 1.107 | 0.784 | 0.966 | 1.311 | 0.663 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3151
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|nucleus
|
— |
KVKK,RYHKRRY
|
— | — | — | — | — | — |
0.000
|
— | — |
0.613
|
0.095
|
0.008
|
0.584
|
0.293
|
0.192
|
0.184
|
0.028
|
0.143
|
0.051
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003306
|
1.000
|
2.000
|
Hsc_gene_21941.t1;Hsc_gene_21941.t2
|
Hsc_gene_21941.t1;Hsc_gene_21941.t2
|
— |
F1QFR9.2 Proteasome activator complex subunit 4A [Danio rerio]
|
KAI1720671.1 proteasome-substrate-size regulator, mid region domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016504|GO:0070577|GO:0070628
|
GO:0005575_0.900|GO:0110165_0.900|GO:0016020_0.841|GO:0005622_0.821|GO:0043226_0.760|GO:0043229_0.751|GO:0043227_0.733|GO:0043231_0.702|GO:0008150_0.628|GO:0005634_0.583|GO:0009987_0.574|GO:0003674_0.548
|
IPR011989+1590-1793+|IPR016024+243-744_947-1778+|IPR021843+1733-1819+|IPR032430+321-460_481-796+|IPR035309+864-1819+
|
— |
PF11919+1733-1819+Domain_of_unknown_function_(DUF3437)|PF16507+321-460_481-796+Proteasome-substrate-size_regulator,_mid_region
|
— |
PTHR32170+864-1819+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-5
|
1.000
|
6-1819
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.509
|
207501.770
|
6.572
|
2.500
|
25.673
|
13.634
|
46.124
|
53.876
|
13.744
|
11.930
|
45.794
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.