Hg_chrom2_TN10mRNA_3300
Organism: Heterodera glycines Gene Locus: chr2:6273353-6278916 Feature type: polypeptideProtein Sequence
Length: 928
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.915 | 0.727 | 1.234 | 0.334 | 1.688 | 1.879 | 0.616 | 1.024 | 0.814 | 1.209 | 0.8 | 1.585 | 0.718 | 0.85 | 1.891 | 1.062 | 0.689 | 0.751 | 0.912 | 0.57 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3154
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Eggs_Female
|
0.983
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RKKR,ARRNRRRRDR,KKVGADIRNIRRRAD,RKPKSKKVGADIRNIRRRA,KRHTASGHSSAAAARRRSV
|
— | — | — | — | — | — |
0.000
|
— | — |
0.730
|
0.039
|
0.004
|
0.346
|
0.054
|
0.095
|
0.142
|
0.055
|
0.029
|
0.055
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006804
|
1.000
|
1.000
|
Hsc_gene_21940.t1
|
Hsc_gene_21940.t1;Hsc_gene_21940.t2
|
— |
P58501.3 PAX3- and PAX7-binding protein 1 [Mus musculus]
|
KAF7639747.1 GCFC domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000398|GO:0003677|GO:0005634
|
GO:0005575_0.932|GO:0110165_0.929|GO:0005622_0.885|GO:0008150_0.716|GO:0009987_0.684|GO:0016020_0.660|GO:0043226_0.639|GO:0043229_0.609|GO:0043227_0.569|GO:0005737_0.559|GO:0008152_0.543|GO:0043170_0.543|GO:0044238_0.534|GO:0044237_0.529|GO:0043231_0.526|GO:0009058_0.522|GO:0009059_0.519|GO:0044249_0.519|GO:0010467_0.512|GO:0006139_0.504|GO:0090304_0.501
|
IPR012890+15-902+|IPR022783+631-846+
|
— |
PF07842+631-846+GC-rich_sequence_DNA-binding_factor-like_protein
|
— |
PTHR12214+15-902+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-423;517-604
|
2.000
|
424-516;605-928
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.544
|
106131.780
|
5.527
|
-12.500
|
33.513
|
7.759
|
55.603
|
44.397
|
16.595
|
16.918
|
44.935
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
darkgrey
|
1409.361
|
1780.722
|
1228.275
|
1134.326
|
1277.921
|
1090.781
|
1837.410
|
1053.994
|
1511.968
|
1505.691
|
1508.381
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.766
|
-0.788
|
— |
0.140
|
-0.214
|
0.763
|
— |
0.944
|
— | — | — | — | — |
No JSON data available for plots.