Hg_chrom2_TN10mRNA_3301
Organism: Heterodera glycines Gene Locus: chr2:6280329-6282834 Feature type: polypeptideProtein Sequence
Length: 390
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.312 | 0.537 | 0.979 | 0.442 | 0.855 | 0.789 | 0.916 | 1.282 | 1.311 | 1.49 | 0.583 | 0.905 | 1.282 | 0.838 | 1.57 | 0.989 | 0.883 | 1.166 | 0.592 | 0.452 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3155
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-ppJ2_pJ2_J3_J4_Female_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
peroxisomal_targeting_signal
|
peroxisome
|
— | — |
44-64
|
0.952
|
— | — | — | — |
0.000
|
— | — |
0.241
|
0.212
|
0.019
|
0.141
|
0.043
|
0.095
|
0.025
|
0.901
|
0.103
|
0.053
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006805
|
1.000
|
1.000
|
Hsc_gene_21938.t1
|
Hsc_gene_21938.t1;Hsc_gene_21939.t1
|
— |
B8AKX6.1 Glycolate oxidase 1 [Oryza sativa Indica Group]
|
KAF7629983.1 FMN hydroxy acid dehydrogenase domain-containing protein [Meloidogyne graminicola]
|
No
|
-0.090
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0010181|GO:0016491
|
GO:0005575_0.832|GO:0110165_0.828|GO:0008150_0.772|GO:0016020_0.747|GO:0005622_0.667|GO:0005737_0.643|GO:0043226_0.627|GO:0043229_0.608|GO:0009987_0.602|GO:0008152_0.592|GO:0043227_0.586|GO:0043231_0.580|GO:0003674_0.549|GO:0044237_0.504
|
IPR000262+22-374+|IPR008259+275-281+|IPR012133+2-383_13-374+|IPR013785+6-386+|IPR037396+3-382+
|
— |
PF01070+22-374+FMN-dependent_dehydrogenase
|
G3DSA:3.20.20.70:FF:000029+7-382+L-lactate_dehydrogenase
|
PTHR10578+8-374+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-390
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.728
|
42457.880
|
8.622
|
9.000
|
24.615
|
9.487
|
42.308
|
57.692
|
14.103
|
10.513
|
52.308
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
magenta
|
338.951
|
92.877
|
452.643
|
390.824
|
515.625
|
362.895
|
823.085
|
649.253
|
144.260
|
142.016
|
142.978
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.055
|
1.936
|
— |
0.368
|
-0.492
|
1.192
|
0.738
|
0.485
|
— | — | — | — | — |
No JSON data available for plots.