Hg_chrom2_TN10mRNA_3302
Organism: Heterodera glycines Gene Locus: chr2:6282829-6289624 Feature type: polypeptideProtein Sequence
Length: 622
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.692 | 0.897 | 0.877 | 0.776 | 1.179 | 0.783 | 0.632 | 1.045 | 0.965 | 1.304 | 0.658 | 1.324 | 1.831 | 1.299 | 1.312 | 1.102 | 0.527 | 1.462 | 1.608 | 0.757 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3156
|
— | — |
1.444
|
1.000
|
2.000
|
1.000
|
2.000
|
2.000
|
1.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-ppJ2_pJ2_J3_J4_Female_Male
|
0.968
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
endoplasmic_reticulum
|
— | — |
15-37
|
0.997
|
— | — | — | — |
0.000
|
— | — |
0.193
|
0.110
|
0.025
|
0.172
|
0.688
|
0.153
|
0.426
|
0.096
|
0.155
|
0.166
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001136
|
3.000
|
2.000
|
Hsc_gene_21933.t1;Hsc_gene_21937.t1
|
Hsc_gene_21933.t1;Hsc_gene_21936.t1
|
— | — |
KAI1707582.1 methyltransferase-like protein 13 [Ditylenchus destructor]
|
No
|
-0.200
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.787|GO:0110165_0.787|GO:0008150_0.596|GO:0005622_0.595|GO:0005737_0.581|GO:0003674_0.520
|
IPR029063+129-369_165-327_461-591_497-587+
|
— | — | — |
PTHR43317+493-584+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-622
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.671
|
70748.440
|
6.444
|
-0.500
|
24.759
|
13.344
|
42.605
|
57.395
|
12.862
|
11.897
|
49.518
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
saddlebrown
|
376.934
|
54.629
|
270.137
|
159.443
|
149.542
|
117.499
|
245.866
|
419.502
|
1254.012
|
177.347
|
638.775
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.076
|
1.408
|
-0.651
|
— |
-0.333
|
1.077
|
1.740
|
-0.631
|
— | — | — | — | — |
No JSON data available for plots.