Hg_chrom2_TN10mRNA_3304
Organism: Heterodera glycines Gene Locus: chr2:6285842-6288123 Feature type: polypeptideProtein Sequence
Length: 453
(Signal peptide: 1-27)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.796 | 0.821 | 0.963 | 0.99 | 0.809 | 1.132 | 1.025 | 0.442 | 1.472 | 1.193 | 0.97 | 1.299 | 1.717 | 1.061 | 0.811 | 1.104 | 0.832 | 0.635 | 1.189 | 1.299 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3157
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
mitochondria
|
RRFDSLRFQLRRKGRL
|
8-30
|
0.998
|
— | — |
1-27
|
0.989
|
0.999
|
0.000
|
0.000
|
0.184
|
0.139
|
0.034
|
0.331
|
0.212
|
0.224
|
0.249
|
0.055
|
0.130
|
0.751
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006806
|
1.000
|
1.000
|
Hsc_gene_21934.t1
|
Hsc_gene_21934.t1;Hsc_gene_21935.t1
|
— |
O01530.1 Aspartic protease 6 [Caenorhabditis elegans]
|
KAI1709455.1 eukaryotic aspartyl protease domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004190|GO:0006508
|
GO:0005575_0.813|GO:0110165_0.810|GO:0008150_0.731|GO:0003674_0.603|GO:0016020_0.589|GO:0005622_0.539|GO:0005737_0.539|GO:0009987_0.520|GO:0071944_0.519
|
IPR001461+28-444_95-115_279-292_327-338_418-433+|IPR001969+327-338+|IPR021109+18-444_39-285_286-444+|IPR033121+88-443_89-442+|IPR034164+89-442+
|
— |
PF00026+88-443+Eukaryotic_aspartyl_protease
|
G3DSA:2.40.70.10:FF:000058+281-442+ASpartyl_Protease
|
PTHR47966+28-444+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-453
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.801
|
50460.850
|
7.404
|
3.000
|
21.413
|
13.024
|
42.163
|
57.837
|
11.258
|
10.155
|
49.669
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |