Hg_chrom2_TN10mRNA_3305
Organism: Heterodera glycines Gene Locus: chr2:6292372-6315613 Feature type: polypeptideProtein Sequence
Length: 3,999
(Signal peptide: 1-24)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.782 | 1.326 | 0.909 | 2.095 | 0.934 | 1.237 | 0.953 | 1.063 | 1.095 | 0.929 | 0.705 | 1.0 | 1.313 | 1.26 | 1.056 | 1.115 | 0.89 | 0.746 | 1.289 | 0.441 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3158
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
18-ppJ2_pJ2_J3_J4_Male
|
0.996
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
nucleus
|
KRRS,RKRR,GGRRRRR,RKARKCVKNFVRRAVR
|
— | — | — | — |
1-24
|
0.897
|
0.507
|
1.000
|
1.000
|
0.192
|
0.075
|
0.019
|
0.237
|
0.089
|
0.193
|
0.179
|
0.040
|
0.758
|
0.304
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006807
|
1.000
|
1.000
|
Hsc_gene_21930.t1
|
Hsc_gene_21929.t1;Hsc_gene_21929.t2;Hsc_gene_21929.t3;Hsc_gene_21930.t1
|
— | — |
KAH7731024.1 Fibropellin-1 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005509|GO:0005515
|
GO:0008150_0.946|GO:0009987_0.867|GO:0005575_0.821|GO:0110165_0.821|GO:0065007_0.772|GO:0050789_0.750|GO:0050794_0.700|GO:0032502_0.688|GO:0048856_0.688|GO:0003674_0.662|GO:0032501_0.650|GO:0071944_0.647|GO:0016020_0.645|GO:0050896_0.622|GO:0005622_0.586|GO:0005886_0.556|GO:0048869_0.548|GO:0007275_0.547|GO:0030154_0.547|GO:0005488_0.542|GO:0048518_0.513|GO:0048731_0.513
|
IPR000436+677-728_731-808_733-806_988-1052_990-1050_1055-1125_1057-1123_1057-1124_1128-1195+|IPR000742+872-919_875-919_923-968_2202-2231_2219-2230_2233-2270_2236-2270_2258-2269_2292-2336_2337-2375_2340-2375_2363-2374_2380-2426_2414-2425_2433-2472_2436-2472_2460-2471_2474-2516_2477-2516_2483-2513_2504-2515_2518-2555_2521-2555_2543-2554_2560-2602_2568-2602_2590-2601_2604-2647_2607-2647_2635-2646_2649-2689_2652-2689_2691-2732_2694-2732_2734-2774_2737-2774_2762-2773_3542-3594+|IPR001304+48-187+|IPR001881+880-919_920-968_2474-2516_2518-2555_2650-2689+|IPR002172+190-234_196-235_200-233+|IPR003410+3020-3108_3023-3106+|IPR007110+1126-1249+|IPR009030+2072-2183_3395-3599+|IPR011641+2114-2154_3450-3491_3504-3543_3575-3613+|IPR013320+2798-2965+|IPR016187+25-191+|IPR023415+209-233+|IPR035914+379-495+|IPR035976+763-812_1057-1132+|IPR036055+200-231_201-237+|IPR050906+2537-2776+
|
SM00032+677-728_733-806_990-1050_1057-1123_1128-1195+|SM00179+880-919_920-968_2474-2516_2518-2555_2650-2689+|SM00181+875-919_923-968_2202-2231_2236-2270_2292-2336_2340-2375_2380-2426_2436-2472_2477-2516_2521-2555_2560-2602_2607-2647_2652-2689_2694-2732_2737-2774_3542-3594+|SM00192+196-235+|SM01411+2109-2154_3397-3437_3444-3491_3498-3543_3570-3613+
|
PF00008+2483-2513+EGF-like_domain|PF00084+990-1050+Sushi_repeat_(SCR_repeat)|PF02494+3023-3106+HYR_domain|PF07699+2114-2154_3450-3491_3504-3543_3575-3613+Tyrosine-protein_kinase_ephrin_type_A/B_receptor-like|PF13385+2810-2958+Concanavalin_A-like_lectin/glucanases_superfamily
|
— |
PTHR24044+2537-2776+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1629-1693;3248-3304;3720-3896
|
4.000
|
1-1628;1694-3247;3305-3719;3897-3999
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.820
|
439467.680
|
6.679
|
11.500
|
22.556
|
10.028
|
46.312
|
53.688
|
11.953
|
10.603
|
56.214
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
3079.482
|
874.866
|
1997.678
|
1918.228
|
1667.630
|
1724.150
|
1364.673
|
2145.341
|
257.687
|
8894.757
|
5193.155
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.961
|
0.995
|
— |
-0.233
|
— |
-0.328
|
— |
-0.511
|
-5.233
|
— | — | — | — |