Hg_chrom2_TN10mRNA_3306
Organism: Heterodera glycines Gene Locus: chr2:6316063-6318677 Feature type: polypeptideProtein Sequence
Length: 547
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.68 | 1.701 | 0.632 | 0.315 | 1.188 | 1.078 | 0.522 | 0.914 | 1.828 | 1.556 | 1.44 | 2.043 | 1.676 | 0.457 | 0.634 | 1.332 | 0.989 | 0.388 | 0.703 | 0.538 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3159
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
17-ppJ2_pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
chloroplast
|
FKVK,KKAGKSLINDKKQKH,KKSANKMFPFRRTKS,KKMLKKVPVEFKERLK,KKLMIEAGLMEEAKEKVR,KKVPVEFKERLKIFQKQKR
|
— | — |
44-84
|
0.948
|
— |
0.526
|
0.133
|
0.000
|
— |
0.542
|
0.213
|
0.007
|
0.509
|
0.153
|
0.122
|
0.114
|
0.035
|
0.181
|
0.208
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006808
|
1.000
|
1.000
|
Hsc_gene_21928.t1
|
Hsc_gene_21928.t1
|
— | — |
KAI3407650.1 hypothetical protein GPALN_014999 [Globodera pallida]
|
MDP4177747
|
0.400
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-547
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.836
|
62163.830
|
9.589
|
16.000
|
25.046
|
10.603
|
51.920
|
48.080
|
14.442
|
10.603
|
42.230
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
skyblue3
|
927.144
|
3.269
|
96.905
|
103.570
|
34.897
|
5.523
|
1.617
|
8.002
|
1372.794
|
2931.493
|
2263.479
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4.656
|
4.841
|
— |
-1.598
|
-2.647
|
-1.766
|
— |
-2.166
|
— |
-3.580
|
-6.072
|
— | — |