Hg_chrom2_TN10mRNA_3307
Organism: Heterodera glycines Gene Locus: chr2:6319453-6330205 Feature type: polypeptideProtein Sequence
Length: 1,764
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.765 | 1.015 | 0.928 | 0.606 | 1.049 | 1.715 | 0.682 | 1.389 | 1.109 | 1.586 | 0.756 | 0.7 | 1.213 | 0.774 | 1.33 | 1.255 | 0.874 | 0.799 | 1.134 | 0.6 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3160
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
lysosome_vacuole
|
— |
KKHK,KRQK,KQKRSKRSNLRQK,RRATGGKVLQRNAKK,KRERWLDELETVHKRKLL
|
— | — | — | — | — | — |
0.000
|
— | — |
0.085
|
0.566
|
0.061
|
0.384
|
0.371
|
0.679
|
0.555
|
0.160
|
0.366
|
0.115
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006809
|
1.000
|
1.000
|
Hsc_gene_21926.t1
|
Hsc_gene_21924.t1;Hsc_gene_21926.t1
|
— |
Q5THJ4.2 Intermembrane lipid transfer protein VPS13D [Homo sapiens]
|
KAI1721726.1 vacuolar protein sorting-associated protein 13D [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.913|GO:0005575_0.781|GO:0110165_0.777|GO:0009987_0.735|GO:0016020_0.667|GO:0005622_0.640|GO:0043226_0.617|GO:0043227_0.563|GO:0008152_0.556|GO:0016043_0.527|GO:0043229_0.527|GO:0071840_0.527|GO:0005737_0.524
|
IPR026847+6-980+|IPR026854+2-112+|IPR031645+1286-1398+|IPR031646+145-378+
|
— |
PF12624+2-112+VPS13-like,_N-terminal|PF16908+145-378+Vacuolar_sorting-associated_protein_13,_extended-chorein|PF16909+1286-1398+Vacuolar-sorting-associated_13_protein,_DH-like_domain
|
— |
PTHR16166+6-980+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
648-795;1644-1724
|
3.000
|
1-647;796-1643;1725-1764
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.724
|
199079.870
|
7.692
|
26.500
|
25.680
|
10.658
|
50.850
|
49.150
|
14.286
|
11.395
|
46.939
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
2287.155
|
2422.728
|
1827.850
|
1596.667
|
1507.102
|
1573.243
|
1912.380
|
1523.505
|
1682.811
|
4107.891
|
3068.571
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.636
|
-0.739
|
— |
-0.115
|
— |
0.291
|
— |
0.470
|
— | — | — | — | — |
No JSON data available for plots.