Hg_chrom2_TN10mRNA_3308
Organism: Heterodera glycines Gene Locus: chr2:6323816-6326060 Feature type: polypeptideProtein Sequence
Length: 561
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.223 | 1.451 | 1.102 | 0.922 | 1.04 | 1.097 | 0.467 | 1.783 | 0.99 | 1.518 | 1.269 | 1.363 | 1.139 | 0.377 | 0.946 | 0.738 | 0.555 | 0.756 | 0.548 | 1.52 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3161
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.508
|
0.169
|
0.009
|
0.487
|
0.204
|
0.272
|
0.378
|
0.023
|
0.195
|
0.099
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006810
|
1.000
|
1.000
|
Hsc_gene_21925.t1
|
Hsc_gene_21925.t1
|
— |
Q4R7Z9.1 Intraflagellar transport protein 56 [Macaca fascicularis]
|
KAI1720726.1 tetratricopeptide repeat domain-containing protein [Ditylenchus destructor]
|
No
|
-0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.874|GO:0110165_0.870|GO:0016020_0.765|GO:0008150_0.749|GO:0043226_0.739|GO:0043227_0.700|GO:0005622_0.697|GO:0071944_0.697|GO:0009987_0.682|GO:0005886_0.674|GO:0032991_0.651|GO:0042995_0.577|GO:0098590_0.577|GO:0120025_0.572|GO:0030990_0.555|GO:0005929_0.554|GO:0071840_0.551|GO:0016043_0.544|GO:0051179_0.532|GO:0051234_0.523|GO:0006810_0.522|GO:0051641_0.507|GO:0006996_0.503
|
IPR011990+8-150_29-116_150-341_151-256_266-541+|IPR030511+1-559+
|
— |
PF14559+166-225+Tetratricopeptide_repeat
|
— |
PTHR14781+1-559+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-561
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.568
|
64158.400
|
7.995
|
14.000
|
28.877
|
13.547
|
47.950
|
52.050
|
16.578
|
12.299
|
44.920
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.