Hg_chrom2_TN10mRNA_3310
Organism: Heterodera glycines Gene Locus: chr2:6331959-6334633 Feature type: polypeptideProtein Sequence
Length: 562
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.931 | 0.745 | 0.776 | 1.657 | 0.771 | 1.46 | 0.508 | 1.157 | 0.672 | 1.563 | 0.701 | 1.151 | 1.236 | 1.335 | 1.525 | 1.22 | 0.788 | 0.782 | 1.642 | 0.628 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3163
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
21-Not_Clustered
|
0.639
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
chloroplast
|
KRHR
|
8-30
|
0.973
|
29-49
|
0.998
|
— |
0.831
|
0.001
|
0.000
|
— |
0.234
|
0.139
|
0.108
|
0.399
|
0.206
|
0.297
|
0.167
|
0.008
|
0.121
|
0.517
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006812
|
1.000
|
1.000
|
Hsc_gene_21922.t1
|
Hsc_gene_21922.t1
|
— |
O17861.1 GILT-like protein F37H8.5 [Caenorhabditis elegans]
|
KAI1720355.1 gamma interferon inducible lysosomal thiol reductase (GILT) domain-containing protein [Ditylenchus destructor]
|
No
|
0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016671
|
GO:0005575_0.907|GO:0110165_0.907|GO:0008150_0.638|GO:0065007_0.585|GO:0050789_0.574|GO:0016020_0.552|GO:0071944_0.525|GO:0050896_0.520|GO:0005886_0.509|GO:0005622_0.506
|
IPR004911+123-231_345-552+
|
— |
PF03227+123-231+Gamma_interferon_inducible_lysosomal_thiol_reductase_(GILT)
|
— |
PTHR13234+345-552+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-562
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.859
|
63485.230
|
8.695
|
24.500
|
23.310
|
11.032
|
45.552
|
54.448
|
14.413
|
8.897
|
50.000
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
turquoise
|
472.691
|
52.590
|
17.247
|
1386.282
|
1603.403
|
611.352
|
134.582
|
125.913
|
2.410
|
591.954
|
339.292
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.841
|
4.583
|
6.440
|
0.177
|
-1.374
|
-2.177
|
-2.395
|
— |
-8.053
|
9.419
|
— | — | — |