Hg_chrom2_TN10mRNA_3313
Organism: Heterodera glycines Gene Locus: chr2:6341477-6344396 Feature type: polypeptideProtein Sequence
Length: 618
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.922 | 1.091 | 0.471 | 0.391 | 0.62 | 0.539 | 0.655 | 1.133 | 1.402 | 1.924 | 0.686 | 1.237 | 1.978 | 0.996 | 0.693 | 1.04 | 1.114 | 1.348 | 1.245 | 0.761 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3166
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— | — |
5-37
|
0.834
|
— | — | — | — |
0.001
|
— | — |
0.088
|
0.133
|
0.013
|
0.107
|
0.412
|
0.374
|
0.309
|
0.009
|
0.597
|
0.044
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006815
|
1.000
|
1.000
|
Hsc_gene_21919.t1
|
Hsc_gene_21919.t1
|
— |
Q9GJY3.1 Sulfate transporter [Ovis aries]
|
KAF7633008.1 Sulfate permease family protein 3 [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020|GO:0055085
|
GO:0008150_0.863|GO:0005575_0.853|GO:0110165_0.848|GO:0016020_0.821|GO:0071944_0.801|GO:0005886_0.790|GO:0009987_0.789|GO:0003674_0.732|GO:0051179_0.724|GO:0051234_0.724|GO:0006810_0.723|GO:0055085_0.673|GO:0005215_0.592|GO:0022857_0.592|GO:0098660_0.537|GO:0015318_0.525|GO:0015698_0.517|GO:0006811_0.501
|
IPR001902+11-610_20-610+|IPR002645+490-618_493-610+|IPR011547+34-435+|IPR036513+479-613_489-603+
|
— |
PF00916+34-435+Sulfate_permease_family|PF01740+493-610+STAS_domain
|
— |
PTHR11814+11-610+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
618-618
|
1.000
|
1-617
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.799
|
68487.610
|
9.292
|
17.000
|
16.505
|
13.592
|
37.379
|
62.621
|
10.194
|
6.311
|
50.000
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
762.728
|
45.091
|
197.629
|
323.941
|
308.505
|
1466.966
|
558.484
|
2382.312
|
34.706
|
1329.808
|
774.764
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.905
|
2.708
|
0.820
|
— |
2.266
|
-1.378
|
— |
-1.938
|
-5.381
|
— | — | — | — |
No JSON data available for plots.