Hg_chrom2_TN10mRNA_3316
Organism: Heterodera glycines Gene Locus: chr2:6350673-6352729 Feature type: polypeptideProtein Sequence
Length: 453
(Signal peptide: 1-16)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.667 | 1.335 | 0.843 | 1.142 | 1.435 | 1.415 | 0.683 | 0.993 | 1.57 | 1.372 | 0.97 | 1.299 | 2.085 | 0.764 | 1.397 | 0.725 | 0.724 | 0.569 | 0.509 | 0.195 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3169
|
— | — |
2.000
|
2.000
|
2.000
|
1.000
|
2.000
|
2.000
|
2.000
|
2.000
|
2.000
|
3.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-Not_Clustered
|
0.809
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide
|
cytoplasm
|
nucleus
|
KNSNRRRKRKKL,RKHLSFVLLFLAKRYRIR
|
— | — | — | — |
1-16
|
0.959
|
1.000
|
1.000
|
1.000
|
0.401
|
0.051
|
0.040
|
0.417
|
0.404
|
0.326
|
0.409
|
0.030
|
0.320
|
0.176
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000385
|
2.000
|
6.000
|
Hsc_gene_21914.t1;Hsc_gene_21947.t1;Hsc_gene_9155.t1;Hsc_gene_9155.t2;Hsc_gene_9912.t1;Hsc_gene_9912.t2
|
Hsc_gene_21914.t1;Hsc_gene_21947.t1;Hsc_gene_21948.t1
|
— |
Q570X5.1 RING-H2 finger protein ATL58 [Arabidopsis thaliana]
|
XP_034583456.1 RING-H2 finger protein ATL3-like [Setaria viridis]
|
GAA0176874
|
0.150
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.880|GO:0003674_0.713|GO:0005575_0.645|GO:0110165_0.639|GO:0009987_0.583|GO:0016020_0.579|GO:0008152_0.535|GO:0043170_0.510|GO:0044238_0.502
|
IPR001841+344-388_345-387_345-388+|IPR013083+324-395+
|
SM00184+345-387+
|
PF13639+344-388+Ring_finger_domain
|
— |
PTHR45676+261-392+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
393-453
|
1.000
|
1-392
|
1iym_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.638
|
51960.740
|
7.295
|
4.500
|
28.477
|
10.817
|
49.227
|
50.773
|
15.232
|
13.245
|
42.384
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
pink
|
312.103
|
49.392
|
37.236
|
40.750
|
139.694
|
20.293
|
38.811
|
15.444
|
144.152
|
1129.228
|
707.052
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.643
|
— | — |
1.748
|
-2.770
|
0.944
|
— |
1.472
|
— | — |
-2.897
|
— | — |