Hg_chrom2_TN10mRNA_3317
Organism: Heterodera glycines Gene Locus: chr2:6355132-6356786 Feature type: polypeptideProtein Sequence
Length: 314
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.963 | 1.111 | 1.158 | 0.329 | 1.592 | 1.143 | 0.834 | 1.115 | 0.92 | 1.205 | 0.82 | 0.562 | 1.062 | 0.919 | 1.625 | 0.91 | 0.574 | 1.158 | 0.735 | 0.562 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3170
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RKRKINRSNKNGLKIRRRA,KRKINRSNKNGLKIRRRAD
|
— | — | — | — | — | — |
0.000
|
— | — |
0.911
|
0.282
|
0.018
|
0.276
|
0.018
|
0.010
|
0.047
|
0.006
|
0.021
|
0.081
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006818
|
1.000
|
1.000
|
Hsc_gene_21913.t1
|
Hsc_gene_21913.t1
|
— | — |
KAF7638555.1 Sm domain-containing protein [Meloidogyne graminicola]
|
No
|
-0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000213|GO:0003676|GO:0006388
|
GO:0005575_0.910|GO:0110165_0.900|GO:0005622_0.839|GO:0016020_0.824|GO:0043226_0.783|GO:0043229_0.751|GO:0043227_0.728|GO:0043231_0.720|GO:0005634_0.607|GO:0008150_0.560|GO:0009987_0.503
|
IPR006677+215-298_215-308+|IPR011856+213-311+|IPR036167+215-303+
|
— |
PF01974+215-298+tRNA_intron_endonuclease,_catalytic_C-terminal_domain
|
— |
PTHR13070+25-308+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-90
|
1.000
|
91-314
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.544
|
35181.460
|
5.500
|
-4.500
|
31.529
|
8.917
|
50.637
|
49.363
|
15.605
|
15.924
|
49.682
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
grey
|
947.369
|
413.202
|
396.822
|
498.220
|
589.137
|
491.416
|
605.302
|
321.036
|
227.501
|
2730.939
|
1658.037
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.289
|
— |
0.438
|
0.210
|
-0.247
|
0.311
|
-0.717
|
1.057
|
— | — | — | — | — |
No JSON data available for plots.