Hg_chrom2_TN10mRNA_3318
Organism: Heterodera glycines Gene Locus: chr2:6356977-6357932 Feature type: polypeptideProtein Sequence
Length: 100
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.465 | 0.93 | 1.273 | 0.69 | 0.667 | 1.538 | 0.476 | 2.0 | 1.778 | 1.216 | 0.909 | 2.353 | 1.389 | 0.385 | 1.224 | 1.286 | 0.656 | 1.515 | 0.0 | 0.588 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3171
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.518
|
0.086
|
0.015
|
0.511
|
0.164
|
0.316
|
0.361
|
0.003
|
0.049
|
0.122
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006819
|
1.000
|
1.000
|
Hsc_gene_21912.t1
|
Hsc_gene_21912.t1
|
— |
O35900.1 U6 snRNA-associated Sm-like protein LSm2 [Mus musculus]
|
KAI1704851.1 LSM domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003723|GO:0006397
|
GO:0005575_0.781|GO:0110165_0.771|GO:0008150_0.726|GO:0005622_0.704|GO:0009987_0.675|GO:0043226_0.659|GO:0016020_0.657|GO:0043229_0.637|GO:0043227_0.594|GO:0003674_0.581|GO:0005488_0.581|GO:0043231_0.580|GO:0032991_0.539|GO:0065007_0.521|GO:0050789_0.505
|
IPR001163+5-72_6-71+|IPR010920+3-90+|IPR016654+1-95_2-89_2-94+|IPR047575+2-76+
|
SM00651+5-72+
|
PF01423+6-71+LSM_domain
|
G3DSA:2.30.30.100:FF:000009+1-95+U6_snRNA-associated_Sm-like_protein_LSm2
|
PTHR13829+2-94+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
98-100
|
1.000
|
1-97
|
8rm5_62
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.652
|
11423.230
|
7.911
|
3.000
|
27.000
|
11.000
|
50.000
|
50.000
|
16.000
|
11.000
|
46.000
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.