Hg_chrom2_TN10mRNA_3322
Organism: Heterodera glycines Gene Locus: chr2:6362071-6365099 Feature type: polypeptideProtein Sequence
Length: 544
(Signal peptide: 1-35)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.962 | 1.325 | 1.237 | 1.141 | 0.919 | 0.943 | 0.503 | 1.471 | 1.511 | 1.093 | 1.086 | 0.541 | 1.634 | 0.601 | 0.863 | 1.471 | 0.874 | 0.696 | 0.566 | 0.703 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3175
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
0.989
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
— |
cell_membrane
|
— | — | — | — | — | — |
1-35
|
— |
0.785
|
— |
1.000
|
0.073
|
0.086
|
0.005
|
0.177
|
0.254
|
0.126
|
0.262
|
0.040
|
0.808
|
0.420
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003307
|
1.000
|
2.000
|
Hsc_gene_21909.t1;Hsc_gene_21909.t2
|
Hsc_gene_21909.t1;Hsc_gene_21909.t2
|
— | — |
XP_018903989.1 PREDICTED: RGM domain family member B-like [Bemisia tabaci]
|
No
|
-0.190
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.927|GO:0110165_0.927|GO:0008150_0.859|GO:0009987_0.797|GO:0065007_0.746|GO:0050789_0.738|GO:0016020_0.714|GO:0050794_0.714|GO:0071944_0.678|GO:0005886_0.664|GO:0048518_0.642|GO:0050896_0.622|GO:0003674_0.621|GO:0051716_0.587|GO:0023052_0.553|GO:0007154_0.547|GO:0005488_0.544|GO:0008152_0.543|GO:0044238_0.537|GO:0005515_0.536|GO:0007165_0.536|GO:0043170_0.527|GO:0044237_0.524|GO:0048522_0.517|GO:0007166_0.505|GO:0019222_0.505
|
IPR009496+269-401+|IPR010536+47-243+|IPR040287+42-380+
|
— |
PF06534+269-401+Repulsive_guidance_molecule_(RGM)_C-terminus|PF06535+47-243+Repulsive_guidance_molecule_(RGM)_N-terminus
|
— |
PTHR31428+42-380+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-544
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.675
|
60737.580
|
6.792
|
3.000
|
26.654
|
11.949
|
51.654
|
48.346
|
14.338
|
12.316
|
51.654
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
turquoise
|
83.845
|
24.474
|
59.849
|
88.809
|
228.388
|
135.582
|
77.201
|
51.283
|
3.852
|
114.339
|
66.987
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.058
|
1.722
|
0.680
|
1.329
|
-0.736
|
-0.808
|
-1.503
|
0.725
|
-4.995
|
4.640
|
— | — | — |