Hg_chrom2_TN10mRNA_3323
Organism: Heterodera glycines Gene Locus: chr2:6367468-6369099 Feature type: polypeptideProtein Sequence
Length: 272
(Signal peptide: 1-19)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.727 | 1.282 | 0.869 | 1.268 | 1.042 | 1.225 | 0.919 | 0.919 | 1.552 | 0.845 | 0.891 | 1.081 | 1.634 | 0.495 | 0.6 | 1.261 | 0.964 | 1.114 | 1.697 | 0.757 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3176
|
— | — |
1.556
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
5.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
— | — | — | — | — | — |
1-19
|
0.993
|
0.999
|
0.000
|
0.000
|
0.137
|
0.307
|
0.034
|
0.377
|
0.115
|
0.061
|
0.107
|
0.024
|
0.183
|
0.955
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006822
|
1.000
|
1.000
|
Hsc_gene_21908.t1
|
Hsc_gene_21908.t1
|
— |
P56677.2 Suppressor of tumorigenicity 14 protein homolog [Mus musculus]
|
CAA74204.1 serine proteinase [Heterodera glycines]
|
No
|
-0.180
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004252|GO:0006508
|
GO:0005575_0.785|GO:0110165_0.762|GO:0008150_0.745|GO:0003674_0.607
|
IPR001254+39-258_40-263_47-261_51-257+|IPR001314+67-82_122-136_208-220+|IPR009003+33-264+|IPR018114+77-82+|IPR033116+209-220+|IPR043504+32-262+|IPR051487+31-265+
|
SM00020+39-258+
|
PF00089+51-257+Trypsin
|
G3DSA:2.40.10.10:FF:000068+53-147+transmembrane_protease_serine_2
|
PTHR24256+31-265+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-272
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.634
|
30224.260
|
5.356
|
-3.500
|
21.691
|
12.500
|
46.691
|
53.309
|
10.662
|
11.029
|
52.574
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
purple
|
2273.325
|
291.091
|
8.574
|
60.107
|
9608.431
|
13977.313
|
148.227
|
275.103
|
44.228
|
774.309
|
461.417
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-5.313
|
-2.413
|
2.919
|
7.289
|
0.557
|
-6.552
|
-5.788
|
— | — | — | — | — | — |