Hg_chrom2_TN10mRNA_3324
Organism: Heterodera glycines Gene Locus: chr2:6370024-6375413 Feature type: polypeptideProtein Sequence
Length: 928
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.115 | 0.852 | 0.607 | 0.297 | 0.593 | 0.635 | 0.577 | 1.509 | 1.437 | 1.849 | 0.522 | 1.014 | 2.874 | 0.974 | 1.1 | 1.216 | 0.583 | 0.947 | 1.243 | 0.761 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3177
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
3.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
20-Not_Clustered
|
0.948
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— | — |
2-25
|
0.951
|
— | — | — | — |
0.000
|
— | — |
0.141
|
0.095
|
0.015
|
0.158
|
0.773
|
0.298
|
0.465
|
0.047
|
0.255
|
0.021
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006823
|
1.000
|
1.000
|
Hsc_gene_21907.t2
|
Hsc_gene_21907.t1;Hsc_gene_21907.t2;Hsc_gene_21907.t3
|
— |
Q9R1S3.2 GPI ethanolamine phosphate transferase 1 [Mus musculus]
|
KAF7633921.1 Sulfatase domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005789|GO:0006506|GO:0016020|GO:0016740|GO:0051377
|
GO:0005575_0.788|GO:0110165_0.788|GO:0016020_0.765|GO:0071944_0.727|GO:0005886_0.720|GO:0005622_0.615|GO:0005737_0.604|GO:0008150_0.581|GO:0003674_0.555|GO:0009987_0.532
|
IPR002591+61-278+|IPR007070+13-916+|IPR017850+45-157_56-325_158-355+|IPR017852+422-881+|IPR037671+56-337+
|
— |
PF01663+61-278+Type_I_phosphodiesterase_/_nucleotide_pyrophosphatase|PF04987+422-881+Phosphatidylinositolglycan_class_N_(PIG-N)
|
— |
PTHR12250+13-916+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-928
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.800
|
104770.550
|
9.713
|
32.000
|
18.750
|
17.565
|
36.961
|
63.039
|
11.853
|
6.897
|
45.690
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
1209.561
|
1370.574
|
1394.694
|
1146.470
|
886.337
|
834.803
|
568.636
|
1121.254
|
1199.131
|
1646.441
|
1454.737
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.204
|
-0.395
|
-0.174
|
-0.404
|
— |
-0.549
|
0.322
|
-0.843
|
— | — | — | — | — |
No JSON data available for plots.