Hg_chrom2_TN10mRNA_3325
Organism: Heterodera glycines Gene Locus: chr2:6375966-6377276 Feature type: polypeptideProtein Sequence
Length: 341
(Signal peptide: 1-20)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.955 | 0.546 | 0.533 | 0.809 | 0.733 | 1.579 | 2.688 | 0.733 | 0.652 | 0.594 | 0.489 | 0.518 | 0.407 | 2.876 | 0.958 | 1.005 | 0.433 | 0.8 | 0.451 | 0.431 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3178
|
— | — |
1.444
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
5.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
8-Eggs_J4_Males
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— | — | — | — | — | — |
1-20
|
— |
0.685
|
— |
0.000
|
0.055
|
0.062
|
0.006
|
0.123
|
0.477
|
0.291
|
0.446
|
0.003
|
0.623
|
0.266
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006824
|
1.000
|
1.000
|
Hsc_gene_21907.t4
|
Hsc_gene_21907.t3;Hsc_gene_21907.t4
|
— |
P20784.1 Cuticle collagen rol-6 [Caenorhabditis elegans]
|
KAI6175475.1 Nematode cuticle collagen domain protein [Aphelenchoides bicaudatus]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0042302
|
GO:0008150_0.918|GO:0032502_0.805|GO:0048856_0.805|GO:0032501_0.804|GO:0005575_0.664|GO:0110165_0.659|GO:0007275_0.610|GO:0003674_0.595|GO:0030312_0.550|GO:0071944_0.550|GO:0042303_0.506
|
IPR002486+5-57_8-57+|IPR008160+191-247+|IPR050632+11-325+
|
SM01088+5-57+
|
PF01391+191-247+Collagen_triple_helix_repeat_(20_copies)|PF01484+8-57+Nematode_cuticle_collagen_N-terminal_domain
|
— |
PTHR24637+11-325+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
59-341
|
1.000
|
1-58
|
9han_F
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.913
|
33396.060
|
7.856
|
4.500
|
16.716
|
4.985
|
34.897
|
65.103
|
9.384
|
7.331
|
68.328
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
black
|
3875.128
|
1507.966
|
196.739
|
136.472
|
330.989
|
27439.777
|
200.258
|
9052.441
|
1.542
|
2378.289
|
1359.683
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-3.166
|
-3.603
|
-0.419
|
1.247
|
6.388
|
-7.089
|
-1.718
|
-5.350
|
-10.576
|
6.494
|
— | — |
5.594
|