Hg_chrom2_TN10mRNA_3326
Organism: Heterodera glycines Gene Locus: chr2:6378310-6379813 Feature type: polypeptideProtein Sequence
Length: 352
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.255 | 0.396 | 0.31 | 0.882 | 0.616 | 2.622 | 2.469 | 0.994 | 0.379 | 0.307 | 0.517 | 0.668 | 0.237 | 3.606 | 0.522 | 0.649 | 0.279 | 1.162 | 0.219 | 0.501 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3179
|
— | — |
1.333
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
4.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-J3_J4_Female_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— | — | — | — | — | — | — | — |
0.063
|
— | — |
0.044
|
0.097
|
0.011
|
0.104
|
0.493
|
0.230
|
0.310
|
0.003
|
0.643
|
0.317
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006825
|
1.000
|
1.000
|
Hsc_gene_21906.t1
|
Hsc_gene_21906.t1
|
— |
Q17460.1 Cuticle collagen 10 [Caenorhabditis elegans]
|
CAB88204.1 putative cuticular collagen [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0042302
|
— |
IPR002486+6-58_10-58+|IPR008160+101-134_149-207_217-275+|IPR050632+13-286+
|
SM01088+6-58+
|
PF01391+101-134_149-207_217-275+Collagen_triple_helix_repeat_(20_copies)|PF01484+10-58+Nematode_cuticle_collagen_N-terminal_domain
|
— |
PTHR24637+13-286+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
52-352
|
1.000
|
1-51
|
9han_F
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.931
|
34184.140
|
7.831
|
5.500
|
13.352
|
4.830
|
31.534
|
68.466
|
7.955
|
5.398
|
70.170
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
darkred
|
37488.779
|
160.915
|
162.931
|
12438.539
|
159752.124
|
89772.287
|
87505.886
|
21145.748
|
59.945
|
24866.537
|
14235.141
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
6.135
|
6.364
|
3.651
|
-0.818
|
— |
-2.200
|
2.194
|
-8.838
|
7.866
|
3.137
|
— | — |
No JSON data available for plots.