Hg_chrom2_TN10mRNA_3327
Organism: Heterodera glycines Gene Locus: chr2:6380786-6381923 Feature type: polypeptideProtein Sequence
Length: 275
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.973 | 1.099 | 0.198 | 0.878 | 0.606 | 0.746 | 0.26 | 1.455 | 2.263 | 2.359 | 0.386 | 0.856 | 2.727 | 0.49 | 0.594 | 0.987 | 1.133 | 0.992 | 0.559 | 1.07 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3180
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-Not_Clustered
|
0.800
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— | — |
43-63
|
0.993
|
— | — | — | — |
0.000
|
— | — |
0.121
|
0.066
|
0.033
|
0.129
|
0.383
|
0.140
|
0.135
|
0.066
|
0.690
|
0.058
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006826
|
1.000
|
1.000
|
Hsc_gene_21905.t1
|
Hsc_gene_21905.t1
|
— | — |
KAI3422627.1 hypothetical protein GPALN_013125 [Globodera pallida]
|
No
|
-0.390
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0007606|GO:0016020
|
— |
IPR004151+101-252+|IPR052860+19-261+
|
— |
PF03125+101-252+Sre_G_protein-coupled_chemoreceptor
|
— |
PTHR47521+19-261+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-275
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.532
|
31248.300
|
7.929
|
6.000
|
13.091
|
17.091
|
34.545
|
65.455
|
8.364
|
4.727
|
41.818
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
blue
|
184.297
|
4.672
|
4.446
|
4.657
|
15.293
|
13.182
|
11.031
|
7.434
|
1.382
|
782.496
|
447.733
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — |
1.686
|
— | — | — | — |
-9.341
|
— | — | — | — |
No JSON data available for plots.