Hg_chrom2_TN10mRNA_3328
Organism: Heterodera glycines Gene Locus: chr2:6382297-6386588 Feature type: polypeptideProtein Sequence
Length: 746
(Signal peptide: 1-24)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.92 | 1.528 | 0.877 | 1.387 | 1.519 | 1.34 | 0.67 | 0.804 | 0.804 | 0.833 | 0.873 | 1.262 | 1.266 | 0.98 | 0.875 | 1.475 | 1.143 | 0.609 | 0.722 | 0.355 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3181
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
3.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-J4_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
— |
cell_membrane
|
nucleus
|
KKRP,KKWK,KSGKMRNKTRTDKEEKHGKSSEEKKR
|
— | — | — | — |
1-24
|
0.989
|
1.000
|
1.000
|
1.000
|
0.083
|
0.069
|
0.015
|
0.203
|
0.159
|
0.114
|
0.242
|
0.064
|
0.689
|
0.484
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006827
|
1.000
|
1.000
|
Hsc_gene_21904.t1
|
Hsc_gene_21904.t1
|
— | — |
CDJ93595.1 Protein R11F4.3 [Haemonchus contortus]
|
No
|
-0.130
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR050975+9-129+
|
— | — | — |
PTHR33562+9-129+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
139-291;581-746
|
2.000
|
1-138;292-580
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.625
|
82131.110
|
4.742
|
-23.000
|
25.603
|
8.311
|
54.692
|
45.308
|
11.662
|
13.941
|
55.362
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
orange
|
grey
|
122.435
|
51.498
|
50.919
|
21.648
|
69.017
|
190.077
|
121.230
|
84.945
|
238.807
|
135.546
|
179.801
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-1.387
|
-1.125
|
1.640
|
1.478
|
-0.637
|
-1.275
|
0.660
|
— | — | — | — | — |